Gene omics information

Query gene ID	Contig4512_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig4512_s_at	Contig4512	-	-	2e-2	At2g22080	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig8826_at	Contig8826	-	-	4e+0	At3g58830	haloacid dehalogenase (HAD) superfamily protein	S.X.	H.G.	Please select
0.40	53.1	rbags22i06_at	rbags22i06	-	-	1e-3	At2g23140	binding / ubiquitin-protein ligase	S.X.	H.G.	Please select
0.31	38.6	HV_CEa0008A14r2_s_at	HV_CEa0008A14r2	-	-	2e+0	At3g46060	ATRAB8A	S.X.	H.G.	Please select
0.27	32.1	Contig7725_at	Contig7725	-	-	8e-1	At1g22180	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	S.X.	H.G.	Please select
0.22	24.2	Contig14313_at	Contig14313	-	-	3e+0	At5g14690	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.8	95.7	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
3.7	95.5	GSM398270	HS41-1_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.3	94.6	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.3	94.6	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
3.2	94.3	GSM419979	Awn_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.2	94.3	GSM440970	Control awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.2	94.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM398281	Moroc9-75_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.9	93.4	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
2.9	93.4	GSM372968	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.86	0	831	Contig4512_at	Contig4512	-	-	2e-2	At2g22080	unknown protein	C.G.	S.X.	Please select
0.04	6e-4	44	Contig2467_at	Contig2467	-	-	2e-15	At3g04920	40S ribosomal protein S24 (RPS24A)	C.G.	S.X.	Please select
0.04	6e-4	44	Contig2466_at	Contig2466	-	-	5e-22	At5g28060	40S ribosomal protein S24 (RPS24B)	C.G.	S.X.	Please select
0.04	4e-2	38	HA22J02r_at	HA22J02r	-	-	4e-4	At4g26110	NAP1	C.G.	S.X.	Please select
0.03	4e-2	38	Contig15802_at	Contig15802	-	-	2e-2	At1g47970	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Contig23394_at	Contig23394	-	-	2e-2	At5g46730	glycine-rich protein	C.G.	S.X.	Please select
0.02	1e-1	36	Contig11626_at	Contig11626	-	-	4e-2	At3g50550	unknown protein	C.G.	S.X.	Please select
0.04	1e-1	36	Contig20140_at	Contig20140	-	-	2e-1	At5g12310	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	1e-1	36	Contig4499_s_at	Contig4499	-	-	4e-18	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	2e-2	40	Arabidopsis thaliana	At2g22080	816743	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:nucleus;MBOFPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	7e-3	42	Glycine max	HgAffx.3611.1.A1_at	CK349169	-	-	8e-4	At5g56950	NAP1	C.G.	S.X.	Please select
0.24	7e-13	75	Oryza sativa	Os04g0636800	AK064789.1	-	Conserved hypothetical protein	8e-3	At4g04614	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	4e-7	56	Populus trichocarpa	PtpAffx.50986.1.S1_at	CV235492	hypothetical protein	-	1e-11	At2g22080	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.56	2e-162	571	Triticum aestivum	Ta.6362.1.S1_s_at	BJ284287	-	-	3e-2	At1g52870	peroxisomal membrane protein-related	C.G.	S.X.	Please select
0.05	9e-5	46	Vitis vinifera	1619747_at	CF372623	hypothetical protein LOC100247254	-	7e-5	At2g22080	unknown protein	C.G.	S.X.	Please select
0.16	2e-13	75	Zea mays	Zm.6246.1.S1_a_at	CB042879	hypothetical protein LOC100274295 /// hypothetical protein LOC100277252	-	1e-5	At2g22080	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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