Gene omics information

Query gene ID	Contig4506_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig4506_at	Contig4506	-	-	6e+0	At4g02725	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig6946_at	Contig6946	-	-	1e-5	At5g01200	myb family transcription factor	S.X.	H.G.	Please select
0.67	84.7	Contig6329_at	Contig6329	-	-	3e-31	At2g40490	HEME2	S.X.	H.G.	Please select
0.57	74.9	Contig12065_at	Contig12065	-	-	1e+0	At5g61670	-	S.X.	H.G.	Please select
0.50	66.9	Contig7149_at	Contig7149	-	-	7e-1	At1g04690	KAB1 (POTASSIUM CHANNEL BETA SUBUNIT)	S.X.	H.G.	Please select
0.44	58.9	Contig8876_at	Contig8876	-	-	2e+0	At3g25577	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
130.8	100.0	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
109.0	100.0	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
84.8	100.0	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
48.2	99.9	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.2	98.7	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.9	97.1	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.9	97.1	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.0	93.8	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.0	93.8	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
1.4	83.1	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.66	2e-168	591	Contig4507_at	Contig4507	-	-	6e+0	At1g61760	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	C.G.	S.X.	Please select
0.04	1e-2	40	HO04F17S_at	HO04F17S	-	-	4e+0	At5g62320	ATMYB99 (MYB DOMAIN PROTEIN 99)	C.G.	S.X.	Please select
0.01	5e-2	38	Contig3263_at	Contig3263	-	-	9e-38	At4g20360	ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B)	C.G.	S.X.	Please select
0.03	5e-2	38	Contig23265_at	Contig23265	-	-	5e+0	At5g61030	GR-RBP3 (glycine-rich RNA-binding protein 3)	C.G.	S.X.	Please select
0.01	8e-1	34	Contig6764_at	Contig6764	-	-	1e-6	At5g26710	glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putative	C.G.	S.X.	Please select
0.01	8e-1	34	Contig3713_s_at	Contig3713	-	-	3e-10	At4g33510	DHS2 (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig9352_at	Contig9352	-	-	5e-2	At5g05230	ubiquitin-protein ligase	C.G.	S.X.	Please select
0.01	3e+0	32	Contig7107_at	Contig7107	-	-	2e-1	At2g45480	AtGRF9 (GROWTH-REGULATING FACTOR 9)	C.G.	S.X.	Please select
0.03	3e+0	32	HD08A22r_at	HD08A22r	-	-	2e+0	At5g36970	NHL25 (NDR1/HIN1-LIKE 25)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e+0	32	Arabidopsis thaliana	At4g02725	2745608	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast, membrane;BPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	PsAffx.CL2070Contig1_s_at	PsAffx.CL2070Contig1	-	-	2e+1	At5g44190	GLK2 (GOLDEN2-LIKE 2)	C.G.	S.X.	Please select
0.06	2e-1	38	Oryza sativa	Os.4882.1.S2_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.217060.1.S1_at	pmrna32192	hypothetical protein	-	4e-1	At2g30760	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.76	2e-175	615	Triticum aestivum	TaAffx.3154.1.S1_at	CD886278	-	-	7e+0	At5g59030	COPT1 (copper transporter 1)	C.G.	S.X.	Please select
0.03	7e+0	30	Vitis vinifera	1621757_at	CF373247	-	-	8e-1	At1g29960	peptidase/ serine-type peptidase	C.G.	S.X.	Please select
0.03	3e+0	32	Zea mays	ZmAffx.614.1.A1_at	AI715042	-	-	1e+1	At5g56710	60S ribosomal protein L31 (RPL31C)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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