Gene omics information

Query gene ID	Contig44_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.7	Contig44_s_at	Contig44	-	-	3e-23	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	S.X.	H.G.	Please select
0.73	88.7	Contig17683_at	Contig17683	-	-	2e+0	At3g11730	ATFP8	S.X.	H.G.	Please select
0.50	66.9	Contig7686_at	Contig7686	-	-	2e-1	At1g60650	glycine-rich RNA-binding protein, putative	S.X.	H.G.	Please select
0.42	55.2	rbags16m05_s_at	rbags16m05	-	-	7e-1	At2g21150	XCT (XAP5 CIRCADIAN TIMEKEEPER)	S.X.	H.G.	Please select
0.40	53.1	HU09F16u_s_at	HU09F16u	-	-	8e-1	At2g30980	ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta)	S.X.	H.G.	Please select
0.36	47.1	Contig5894_s_at	Contig5894	-	-	3e-1	At5g33300	chromosome-associated kinesin-related	S.X.	H.G.	Please select
0.18	18.2	Contig5619_at	Contig5619	-	-	3e-3	At1g06690	aldo/keto reductase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
48.8	99.9	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
48.4	99.9	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
40.0	99.9	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
39.0	99.9	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
32.2	99.9	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
31.3	99.9	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
30.7	99.9	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
29.8	99.9	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
21.2	99.7	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
20.8	99.7	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	1195	Contig44_at	Contig44	-	-	3e-23	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.89	0	979	HVSMEh0081E03r2_at	HVSMEh0081E03r2	-	-	2e-23	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.23	2e-56	218	Contig873_s_at	Contig873	-	-	2e-121	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.34	3e-43	174	Contig319_at	Contig319	-	-	2e-48	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.15	3e-43	174	Contig326_x_at	Contig326	-	-	0	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.36	2e-28	125	Contig998_x_at	Contig998	-	-	3e-23	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.36	2e-28	125	Contig998_s_at	Contig998	-	-	3e-23	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.18	1e-14	79	HV12F18u_x_at	HV12F18u	-	-	1e-8	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.21	4e-14	77	rbaal31o06_s_at	rbaal31o06	-	-	4e-5	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	3e-23	109	Arabidopsis thaliana	At5g02500	831020	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	encodes a member of heat shock protein 70 family.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	9e-21	101	Glycine max	GmaAffx.6593.1.S1_at	AW432211	-	-	2e-34	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.30	8e-59	228	Oryza sativa	Os.38581.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	1e-22	107	Populus trichocarpa	PtpAffx.249.167.S1_at	CV229731	hypothetical protein	-	4e-13	At3g09440	heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.21	1e-43	176	Triticum aestivum	Ta.23807.9.S1_x_at	BJ318634	-	-	2e-87	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.10	8e-24	109	Vitis vinifera	1609949_at	CF373330	similar to HSC70-1 (heat shock cognate 70 kDa protein 1); ATP binding	-	0	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.33	3e-61	234	Zea mays	Zm.3081.2.A1_a_at	CF626654	heat shock protein1	-	4e-13	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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