Gene omics information

Query gene ID	Contig4499_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig4499_s_at	Contig4499	-	-	4e-18	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	S.X.	H.G.	Please select
0.83	94.0	Contig4498_at	Contig4498	-	-	2e-1	At1g28290	AGP31 (arabinogalactan-protein 31)	S.X.	H.G.	Please select
0.77	90.8	Contig4497_at	Contig4497	-	-	1e-2	At1g12410	CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)	S.X.	H.G.	Please select
0.71	87.1	Contig9656_at	Contig9656	-	-	1e+0	At2g41225	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig4495_at	Contig4495	-	-	1e+0	At5g12235	CLE22 (CLAVATA3/ESR-RELATED 22)	S.X.	H.G.	Please select
0.61	78.7	Contig21078_at	Contig21078	-	-	6e-1	At1g77765	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.2	99.2	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.4	99.0	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.9	98.3	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1	96.2	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.0	96.0	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	9e-92	337	HVSMEa0006C16r2_s_at	HVSMEa0006C16r2	-	-	2e+0	At2g12475	-	C.G.	S.X.	Please select
0.02	2e-3	44	Contig3066_s_at	Contig3066	-	-	3e+0	At3g05950	germin-like protein, putative	C.G.	S.X.	Please select
0.02	2e-3	44	Contig3067_at	Contig3067	-	-	3e+0	At5g57815	cytochrome c oxidase subunit 6b, putative	C.G.	S.X.	Please select
0.02	2e-3	44	Contig3066_at	Contig3066	-	-	3e+0	At3g05950	germin-like protein, putative	C.G.	S.X.	Please select
0.02	2e-3	44	Contig3063_x_at	Contig3063	-	-	3e-1	At3g51780	ATBAG4 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 4)	C.G.	S.X.	Please select
0.02	2e-3	44	Contig3063_s_at	Contig3063	-	-	3e-1	At3g51780	ATBAG4 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 4)	C.G.	S.X.	Please select
0.01	7e-3	42	Contig18250_at	Contig18250	-	-	6e-1	At3g55460	SCL30	C.G.	S.X.	Please select
0.02	7e-3	42	Contig17800_s_at	Contig17800	-	-	8e-2	At5g25750	unknown protein	C.G.	S.X.	Please select
0.01	7e-3	42	Contig3975_at	Contig3975	-	-	3e-3	At5g04740	ACT domain-containing protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	4e-18	93	Arabidopsis thaliana	At4g22670	828363	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	F:binding;P:response to cadmium ion;C:unknown;MBOPFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	2e-14	81	Glycine max	GmaAffx.78527.2.S1_s_at	BM093896	-	-	3e-10	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	C.G.	S.X.	Please select
0.46	2e-123	444	Oryza sativa	Os.11705.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	9e-8	59	Populus trichocarpa	PtpAffx.606.5.S1_a_at	AJ778048	hypothetical protein	-	5e-25	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.50	0	642	Triticum aestivum	Ta.9783.1.S1_x_at	BG314053	-	-	6e-13	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	C.G.	S.X.	Please select
0.05	5e-6	52	Vitis vinifera	1615008_at	AY036906.1	similar to Hsp70 interacting protein/thioredoxin chimera	-	1e-8	At3g17880	ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN)	C.G.	S.X.	Please select
0.40	8e-135	480	Zea mays	Zm.4878.1.A1_at	AW288995	hsc70-interacting protein	-	6e-8	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage