Gene omics information

Query gene ID	Contig4498_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig4498_at	Contig4498	-	-	2e-1	At1g28290	AGP31 (arabinogalactan-protein 31)	S.X.	H.G.	Please select
0.83	94.0	Contig4495_x_at	Contig4495	-	-	1e+0	At5g12235	CLE22 (CLAVATA3/ESR-RELATED 22)	S.X.	H.G.	Please select
0.83	94.0	Contig4499_s_at	Contig4499	-	-	4e-18	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	S.X.	H.G.	Please select
0.77	90.8	Contig21078_at	Contig21078	-	-	6e-1	At1g77765	unknown protein	S.X.	H.G.	Please select
0.77	90.8	Contig4497_at	Contig4497	-	-	1e-2	At1g12410	CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)	S.X.	H.G.	Please select
0.63	80.3	Contig9656_at	Contig9656	-	-	1e+0	At2g41225	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.6	98.2	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.7	97.7	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.4	97.5	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.0	97.2	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e-6	52	Contig5357_at	Contig5357	-	-	9e-1	At2g23440	unknown protein	C.G.	S.X.	Please select
0.01	3e-2	40	Contig22791_at	Contig22791	-	-	6e-4	At3g01650	RGLG1 (RING domain Ligase1)	C.G.	S.X.	Please select
0.02	1e-1	38	Contig1350_x_at	Contig1350	-	-	2e-1	At1g02840	SR1	C.G.	S.X.	Please select
0.02	1e-1	38	HD03I16u_s_at	HD03I16u	-	-	1e-6	At1g02840	SR1	C.G.	S.X.	Please select
0.01	4e-1	36	Contig17009_at	Contig17009	-	-	5e+0	At3g60600	VAP (VESICLE ASSOCIATED PROTEIN)	C.G.	S.X.	Please select
0.01	2e+0	34	HVSMEm0005P18r2_s_at	HVSMEm0005P18r2	-	-	1e+0	At3g19650	cyclin-related	C.G.	S.X.	Please select
0.01	2e+0	34	Contig6230_at	Contig6230	Hs1 protein	-	4e+0	At4g08097	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig8459_at	Contig8459	-	-	4e-1	At4g36900	RAP2.10 (related to AP2 10)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig15726_at	Contig15726	-	-	6e-1	At3g10190	calmodulin, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-1	38	Arabidopsis thaliana	At1g28290	839723	AGP31 (arabinogalactan-protein 31)	Encodes an atypical arabinogalactan protein that is localized to the plasma membrange. AGP31 is highly expressed in flowers and vascular tissue and is repressed by jasmonic acid. AGP31 may play a role in vascular tissue function during defense and development.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e-3	46	Glycine max	GmaAffx.75745.1.S1_s_at	BM520040	-	-	7e-5	At5g60980	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.56	8e-120	432	Oryza sativa	Os04g0372800	AK101615.1	-	Nuclear transport factor 2 domain containingprotein	2e-1	At3g61260	DNA-binding family protein / remorin family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	5e-3	44	Populus trichocarpa	PtpAffx.101663.1.A1_at	CV256091	-	-	1e-1	At5g02440	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.78	0	2613	Triticum aestivum	Ta.1058.4.S1_at	BJ307805	-	-	5e-12	At3g02468	CPuORF9 (Conserved peptide upstream open reading frame 9)	C.G.	S.X.	Please select
0.02	1e+0	34	Vitis vinifera	1614012_at	CF415366	hypothetical protein LOC100254260	-	3e-1	At5g54980	integral membrane family protein	C.G.	S.X.	Please select
0.51	1e-93	343	Zea mays	Zm.2195.1.A1_at	AW289126	RNA-binding protein-like	-	4e+0	At5g57565	protein kinase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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