CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig4497_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig4497_at Contig4497 - - 1e-2 At1g12410 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) S.X. H.G.
0.80 92.5 Contig25193_at Contig25193 - - 1e+0 Atmg00450 - S.X. H.G.
0.73 88.7 Contig4495_x_at Contig4495 - - 1e+0 At5g12235 CLE22 (CLAVATA3/ESR-RELATED 22) S.X. H.G.
0.71 87.1 Contig4498_at Contig4498 - - 2e-1 At1g28290 AGP31 (arabinogalactan-protein 31) S.X. H.G.
0.71 87.1 Contig4499_s_at Contig4499 - - 4e-18 At4g22670 AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1) S.X. H.G.
0.57 74.9 Contig4495_at Contig4495 - - 1e+0 At5g12235 CLE22 (CLAVATA3/ESR-RELATED 22) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.2 98.5 GSM161200 cold treatment rep1 GSE6993 Barley low temperature stress
6.9 98.3 GSM161221 cold treatment rep3 GSE6993 Barley low temperature stress
6.3 98.1 GSM130800 control, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
6.2 98.0 GSM130799 control, biological rep1 GSE5605 Expression data from barley under salinity stress and JA treatment
6.1 98.0 GSM261039 Dicktoo-deacclimation-rep1 GSE10329 Low temperature stress in cv. Dicktoo
5.6 97.7 GSM130806 JA and salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
5.5 97.6 GSM130802 salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
5.2 97.4 GSM130804 JA, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
5.1 97.3 GSM261036 Dicktoo-subzero-rep1 GSE10329 Low temperature stress in cv. Dicktoo
4.9 97.1 GSM261076 Albina e-16 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e-2 40 Contig3978_at Contig3978 - - 3e-14 At3g18660 PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) C.G. S.X.
0.02 3e-1 36 HVSMEl0002L04r2_s_at HVSMEl0002L04r2 - - 2e+1 At5g23027 unknown protein C.G. S.X.
0.02 3e-1 36 Contig5839_at Contig5839 - - 4e-1 At5g46490 disease resistance protein (TIR-NBS class), putative C.G. S.X.
0.02 1e+0 34 Contig13422_at Contig13422 - - 5e+0 At5g47200 ATRAB1A C.G. S.X.
0.01 1e+0 34 Contig10186_at Contig10186 - - 7e-4 At3g13440 methyltransferase/ nucleic acid binding C.G. S.X.
0.02 5e+0 32 HV14K13u_at HV14K13u - - 3e-3 At5g07910 leucine-rich repeat family protein C.G. S.X.
0.01 5e+0 32 Contig8444_at Contig8444 - - 3e-6 At2g28250 NCRK C.G. S.X.
0.02 5e+0 32 Contig11381_at Contig11381 - - 2e-1 At2g14070 wound-responsive protein-related C.G. S.X.
0.01 5e+0 32 Contig685_at Contig685 - - 0 At1g56070 LOS1 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-2 42 Arabidopsis thaliana At1g12410 837797 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). - - - C.G. S.X.
0.14 7e-14 79 Glycine max Gma.9121.1.S1_at CD403401 - - 2e-34 At1g12410 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) C.G. S.X.
0.60 0 902 Oryza sativa Os06g0136800 AK099815.1 - Peptidase S14, ClpP family protein 2e-10 At1g12410 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) C.G. S.X.
0.16 4e-9 63 Populus trichocarpa PtpAffx.98597.1.S1_at CK096551 hypothetical protein - 1e-47 At1g12410 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) C.G. S.X.
0.72 0 1515 Triticum aestivum Ta.7649.1.S1_x_at BJ242983 - - 2e-4 At1g12410 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) C.G. S.X.
0.13 3e-3 42 Vitis vinifera 1619670_at CF568831 - - 3e-19 At1g12410 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) C.G. S.X.
0.56 0 678 Zea mays Zm.6642.1.S1_at CD437363 PL5L15 - 2e-1 At1g12410 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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