Gene omics information

Query gene ID	Contig4495_x_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig4495_x_at	Contig4495	-	-	1e+0	At5g12235	CLE22 (CLAVATA3/ESR-RELATED 22)	S.X.	H.G.	Please select
0.80	92.5	Contig25193_at	Contig25193	-	-	1e+0	Atmg00450	-	S.X.	H.G.	Please select
0.80	92.5	Contig4498_at	Contig4498	-	-	2e-1	At1g28290	AGP31 (arabinogalactan-protein 31)	S.X.	H.G.	Please select
0.80	92.5	Contig4497_at	Contig4497	-	-	1e-2	At1g12410	CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)	S.X.	H.G.	Please select
0.71	87.1	Contig4499_s_at	Contig4499	-	-	4e-18	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	S.X.	H.G.	Please select
0.67	84.7	Contig21078_at	Contig21078	-	-	6e-1	At1g77765	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
49.9	99.9	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
37.8	99.9	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
33.7	99.9	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
32.7	99.9	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
29.5	99.9	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
28.6	99.8	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
21.7	99.8	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
17.3	99.6	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
15.9	99.6	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
14.7	99.5	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	1374	Contig4495_at	Contig4495	-	-	1e+0	At5g12235	CLE22 (CLAVATA3/ESR-RELATED 22)	C.G.	S.X.	Please select
0.70	0	753	Contig9651_at	Contig9651	-	-	2e+0	At3g63095	-	C.G.	S.X.	Please select
0.78	0	694	Contig4493_s_at	Contig4493	-	-	4e-1	At3g13340	WD-40 repeat family protein	C.G.	S.X.	Please select
0.74	0	634	Contig4494_x_at	Contig4494	-	-	5e+0	At5g55508	unknown protein	C.G.	S.X.	Please select
0.74	0	634	Contig4494_s_at	Contig4494	-	-	5e+0	At5g55508	unknown protein	C.G.	S.X.	Please select
0.67	6e-174	609	HT09H10u_x_at	HT09H10u	-	-	3e+0	At3g23280	zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein	C.G.	S.X.	Please select
0.63	6e-103	373	HT07E22u_x_at	HT07E22u	-	-	9e-1	At4g12850	far-red impaired responsive family protein / FAR1 family protein	C.G.	S.X.	Please select
0.39	4e-27	121	HVSMEh0081A03r2_x_at	HVSMEh0081A03r2	-	-	1e-1	At3g51130	unknown protein	C.G.	S.X.	Please select
0.37	6e-23	107	HT08H21u_at	HT08H21u	-	-	2e+0	At1g64130	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At5g12235	831098	CLE22 (CLAVATA3/ESR-RELATED 22)	Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can partially replace CLV3 function in vivo.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.90395.1.A1_s_at	CF807499	KS-type dehydrin SLTI629	-	2e-1	At1g54410	dehydrin family protein	C.G.	S.X.	Please select
0.25	3e-9	63	Oryza sativa	Os07g0118200	CF315120	-	Protein of unknown function DUF538 family protein	3e-1	At5g18310	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-1	38	Populus trichocarpa	PtpAffx.202752.1.S1_at	pmrna5491	hypothetical protein	-	8e-1	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.80	0	648	Triticum aestivum	Ta.5886.1.S1_at	CD917867	-	-	9e-2	At4g28890	protein binding / ubiquitin-protein ligase/ zinc ion binding	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1613505_at	CK138219.1	-	-	6e+0	At5g58900	myb family transcription factor	C.G.	S.X.	Please select
0.17	2e-6	52	Zea mays	Zm.8094.1.A1_at	BM266491	-	-	2e+0	At3g50720	protein kinase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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