CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig4489_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 84.7 Contig4489_s_at Contig4489 - - 3e+0 At2g29525 - S.X. H.G.
0.83 94.0 Contig4487_s_at Contig4487 - - 4e-1 At5g16470 zinc finger (C2H2 type) family protein S.X. H.G.
0.44 58.9 HW01K06u_s_at HW01K06u - - 3e+0 At1g69660 meprin and TRAF homology domain-containing protein / MATH domain-containing protein S.X. H.G.
0.36 47.1 Contig704_at Contig704 - - 1e-1 At1g15140 oxidoreductase NAD-binding domain-containing protein S.X. H.G.
0.35 45.1 Contig19475_at Contig19475 - - 2e-9 At2g42320 nucleolar protein gar2-related S.X. H.G.
0.09 7.4 Contig19839_at Contig19839 - - 7e+0 At5g17180 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.8 97.8 GSM419983 Seed_Rep3 GSE16754 Comparative transcriptional profiling of organs of the barley spike
5.8 97.8 GSM440977 Control seed_Rep3 GSE17669 Gene expression in the barley spike during drought stress
4.8 97.0 GSM238436 Embryo 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.6 96.8 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.0 96.0 GSM71144 OWB-R stress replicate 3 GSE3170 Barley single feature polymorphisms and drought stress gene expression
4.0 96.0 GSM71143 OWB-R stress replicate 2 GSE3170 Barley single feature polymorphisms and drought stress gene expression
4.0 96.0 GSM71142 OWB-R stress replicate 1 GSE3170 Barley single feature polymorphisms and drought stress gene expression
3.9 95.8 GSM238424 Endosperm 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.8 95.7 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.8 95.7 GSM71139 OWB-D stress replicate 1 GSE3170 Barley single feature polymorphisms and drought stress gene expression
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.53 1e-68 258 Contig4486_at Contig4486 - - 4e-1 At5g16470 zinc finger (C2H2 type) family protein C.G. S.X.
0.20 8e-30 129 Contig4487_s_at Contig4487 - - 4e-1 At5g16470 zinc finger (C2H2 type) family protein C.G. S.X.
0.08 2e-9 61 HR01I06u_at HR01I06u - - 3e+0 At4g23080 unknown protein C.G. S.X.
0.08 6e-3 40 HZ40B21r_s_at HZ40B21r - - 2e+0 At4g33460 ATNAP13 C.G. S.X.
0.02 2e-2 38 Contig15646_at Contig15646 - - 6e-1 At5g18520 - C.G. S.X.
0.01 9e-2 36 Contig6542_at Contig6542 - - 2e-1 At2g05140 phosphoribosylaminoimidazole carboxylase family protein / AIR carboxylase family protein C.G. S.X.
0.03 9e-2 36 Contig10395_at Contig10395 - - 3e-1 At2g36300 integral membrane Yip1 family protein C.G. S.X.
0.02 4e-1 34 Contig6799_at Contig6799 cinnamoyl CoA reductase - 8e-13 At1g15950 CCR1 (CINNAMOYL COA REDUCTASE 1) C.G. S.X.
0.03 4e-1 34 Contig2098_at Contig2098 - - 3e-60 At5g02960 40S ribosomal protein S23 (RPS23B) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e+0 32 Arabidopsis thaliana At2g29525 817501 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPB - - - C.G. S.X.
0.03 1e+0 34 Glycine max PsAffx.C9000033_at PsAffx.C9000033 - - 2e+0 At2g47580 U1A (SPLICEOSOMAL PROTEIN U1A) C.G. S.X.
0.13 7e-12 71 Oryza sativa Os06g0708600 AK100915.1 - Conserved hypothetical protein 1e-1 At1g57906 - C.G. S.X.
0.05 4e+0 32 Populus trichocarpa PtpAffx.200834.1.S1_x_at pmrna1625 hypothetical protein - 2e-1 At3g44261 unknown protein C.G. S.X.
0.46 1e-21 103 Triticum aestivum Ta.6665.3.S1_x_at CA693203 - - 4e-1 At5g16470 zinc finger (C2H2 type) family protein C.G. S.X.
0.03 4e+0 30 Vitis vinifera 1620282_at CB977969 hypothetical protein LOC100243325 - 5e+0 At5g13440 ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative C.G. S.X.
0.11 4e-10 63 Zea mays Zm.13741.1.A1_at CK828166 hypothetical protein LOC100192567 - 3e-2 At3g02790 zinc finger (C2H2 type) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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