Gene omics information

Query gene ID	Contig4477_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig4477_at	Contig4477	-	-	4e-2	At4g10610	CID12	S.X.	H.G.	Please select
0.20	21.1	Contig17523_at	Contig17523	-	-	7e-2	At4g08230	glycine-rich protein	S.X.	H.G.	Please select
0.15	14.1	Contig9703_at	Contig9703	-	-	3e+0	At2g37200	integral membrane protein, putative	S.X.	H.G.	Please select
0.12	10.4	Contig6733_at	Contig6733	-	-	6e-2	At3g44720	ADT4 (arogenate dehydratase 4)	S.X.	H.G.	Please select
0.03	2.6	Contig272_s_at	Contig272	-	-	5e-1	At3g45230	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.03	2.6	HW01F06u_at	HW01F06u	-	-	3e+0	At5g58360	ATOFP3	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
87.1	100.0	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
56.0	100.0	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
51.8	100.0	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
42.3	99.9	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
29.7	99.9	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
23.2	99.8	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
15.1	99.5	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
15.0	99.5	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
11.0	99.2	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.6	98.2	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.81	0	874	Contig4478_at	Contig4478	-	-	7e-1	At4g01200	C2 domain-containing protein	C.G.	S.X.	Please select
0.77	6e-160	563	Contig4479_s_at	Contig4479	-	-	7e-1	At4g01200	C2 domain-containing protein	C.G.	S.X.	Please select
0.39	2e-58	226	Contig12510_at	Contig12510	-	-	4e-1	At5g26790	unknown protein	C.G.	S.X.	Please select
0.19	3e-44	178	HS07A14u_x_at	HS07A14u	-	-	2e+1	At5g52965	unknown protein	C.G.	S.X.	Please select
0.17	3e-32	139	HS07H01u_x_at	HS07H01u	-	-	5e+0	At5g43210	endo/excinuclease amino terminal domain-containing protein	C.G.	S.X.	Please select
0.08	5e-9	61	Contig13380_at	Contig13380	-	-	2e-2	At4g19270	unknown protein	C.G.	S.X.	Please select
0.03	5e-6	52	Contig11037_at	Contig11037	-	-	7e+0	At5g23908	unknown protein	C.G.	S.X.	Please select
0.02	2e-2	40	Contig5918_at	Contig5918	-	-	9e-6	At3g60340	palmitoyl protein thioesterase family protein	C.G.	S.X.	Please select
0.03	2e-2	40	Contig5915_at	Contig5915	-	-	8e-1	At5g63310	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-2	40	Arabidopsis thaliana	At4g10610	826653	CID12	RNA-binding protein, putative. Member of a family of proteins having an PABC binding domain (PAM motif).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-3	46	Glycine max	Gma.4901.2.S1_at	BF071542	-	-	2e-4	At2g21780	unknown protein	C.G.	S.X.	Please select
0.32	8e-36	153	Oryza sativa	Os03g0345700	9631.m02244	-	Hypothetical protein	3e-3	At1g22990	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	9e-1	36	Populus trichocarpa	PtpAffx.224082.1.S1_x_at	pmrna42319	hypothetical protein	-	1e-2	At5g61030	GR-RBP3 (glycine-rich RNA-binding protein 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.52	2e-96	353	Triticum aestivum	Ta.9290.1.S1_at	CD865398	-	-	8e-1	At1g14455	unknown protein	C.G.	S.X.	Please select
0.03	1e-2	40	Vitis vinifera	1616806_at	CF605749	hypothetical protein LOC100259004	-	6e-2	At2g01340	unknown protein	C.G.	S.X.	Please select
0.13	3e-16	85	Zea mays	Zm.949.1.A1_at	CF624182	-	-	1e-1	At5g15970	KIN2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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