CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig4406_x_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 90.8 Contig4406_x_at Contig4406 - - 2e+0 At4g25110 AtMC2 (metacaspase 2) S.X. H.G.
0.50 66.9 Contig6005_x_at Contig6005 - - 3e-1 At1g20130 hydrolase, acting on ester bonds / lipase/ structural constituent of cell wall S.X. H.G.
0.46 61.0 Contig6006_s_at Contig6006 - - 3e+0 At1g60830 U2 snRNP auxiliary factor large subunit, putative S.X. H.G.
0.30 37.0 Contig6007_at Contig6007 - - 2e+1 At5g61412 unknown protein S.X. H.G.
0.09 7.4 Contig8779_at Contig8779 - - 1e+1 At5g05930 guanylyl cyclase-related (GC1) S.X. H.G.
0.07 5.8 HV_CEb0011B08r2_at HV_CEb0011B08r2 - - 4e+0 At3g61880 CYP78A9 (CYTOCHROME P450 78A9) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
32.1 99.9 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots
30.7 99.9 GSM382232 Root_Hg1 GSE15295 Mercury toxicity in barley roots
23.4 99.8 GSM372955 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
18.9 99.7 GSM382233 Root_Hg2 GSE15295 Mercury toxicity in barley roots
15.8 99.6 GSM372954 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
15.2 99.5 GSM372945 genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
14.3 99.5 GSM372984 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
12.6 99.4 GSM372988 genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
12.2 99.4 GSM372985 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.4 99.3 GSM372991 genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.95 0 1045 Contig4405_x_at Contig4405 - - 6e+0 At2g18250 ATCOAD (4-phosphopantetheine adenylyltransferase) C.G. S.X.
0.72 0 898 HD08F14r_x_at HD08F14r - - 1e+0 At4g25110 AtMC2 (metacaspase 2) C.G. S.X.
0.73 0 850 Contig4402_s_at Contig4402 pathogenesis-related protein 10 - 4e-1 At2g35270 DNA-binding protein-related C.G. S.X.
0.03 5e-2 38 Contig13952_at Contig13952 - - 2e+0 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) C.G. S.X.
0.02 5e-2 38 Contig3050_at Contig3050 - - 2e-3 At2g47710 universal stress protein (USP) family protein C.G. S.X.
0.01 5e-2 38 Contig6986_at Contig6986 - - 1e-3 At5g01820 ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1) C.G. S.X.
0.03 2e-1 36 Contig24566_at Contig24566 - - 1e+0 At5g06790 unknown protein C.G. S.X.
0.02 7e-1 34 Contig16762_at Contig16762 - - 8e+0 At5g52740 heavy-metal-associated domain-containing protein C.G. S.X.
0.02 7e-1 34 Contig10905_at Contig10905 - - 2e-3 At1g47490 ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At4g25110 828614 AtMC2 (metacaspase 2) F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;POMFBVA - - - C.G. S.X.
0.03 2e+0 34 Glycine max HgAffx.14459.1.S1_at CB299681 - - 2e+0 At1g08900 carbohydrate transmembrane transporter C.G. S.X.
0.11 2e-7 57 Oryza sativa Os12g0555200 AK070762.1 - Probenazole-inducible protein PBZ1 2e+0 At2g34530 unknown protein C.G. S.X.
0.03 1e-1 38 Populus trichocarpa PtpAffx.220403.1.S1_at pmrna36784 hypothetical protein - 4e-1 At1g49500 unknown protein C.G. S.X.
0.65 1e-158 559 Triticum aestivum Ta.22619.1.S1_at CA687670 - - 8e+0 At4g32340 - C.G. S.X.
0.04 2e+0 32 Vitis vinifera 1616715_at CB343155 - - 9e+0 At5g42630 ATS (ABERRANT TESTA SHAPE) C.G. S.X.
0.13 1e-8 59 Zea mays Zm.10175.1.A1_at BM379420 hypothetical protein LOC100279966 /// pathogenesis-related protein 10 - 7e+0 At4g18692 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage