Gene omics information

Query gene ID	Contig4373_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig4373_at	Contig4373	-	-	4e-2	At1g76470	3-beta-hydroxy-delta5-steroid dehydrogenase/ binding / catalytic/ cinnamoyl-CoA reductase	S.X.	H.G.	Please select
0.52	68.3	Contig3102_at	Contig3102	-	-	2e-13	At5g66510	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	S.X.	H.G.	Please select
0.45	59.3	Contig5778_at	Contig5778	-	-	2e-10	At4g22260	IM (IMMUTANS)	S.X.	H.G.	Please select
0.44	58.9	rbags18j12_s_at	rbags18j12	-	-	3e-6	At1g65980	TPX1 (thioredoxin-dependent peroxidase 1)	S.X.	H.G.	Please select
0.43	56.4	Contig4563_at	Contig4563	-	-	5e-15	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	S.X.	H.G.	Please select
0.42	55.2	Contig8706_at	Contig8706	-	-	5e-4	At4g32400	SHS1 (SODIUM HYPERSENSITIVE 1)	S.X.	H.G.	Please select
0.40	53.1	Contig2826_s_at	Contig2826	-	-	1e-21	At3g44110	ATJ3	S.X.	H.G.	Please select
0.39	50.5	Contig5874_s_at	Contig5874	-	-	1e+0	At1g48610	AT hook motif-containing protein	S.X.	H.G.	Please select
0.39	50.5	Contig4880_x_at	Contig4880	-	-	2e-20	At1g61800	GPT2	S.X.	H.G.	Please select
0.39	50.5	Contig6012_at	Contig6012	-	-	6e-16	At3g62580	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.5	98.8	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.1	98.0	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.9	97.9	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.8	97.8	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1	96.2	GSM372963	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.0	96.0	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.9	95.8	GSM372968	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.6	95.3	GSM372969	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5	95.1	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.75	0	1009	Contig4374_s_at	Contig4374	-	-	6e-1	At2g33600	cinnamoyl-CoA reductase family	C.G.	S.X.	Please select
0.52	0	845	Contig4372_s_at	Contig4372	-	-	9e-1	At1g76470	3-beta-hydroxy-delta5-steroid dehydrogenase/ binding / catalytic/ cinnamoyl-CoA reductase	C.G.	S.X.	Please select
0.38	6e-61	234	rbags17k13_x_at	rbags17k13	-	-	4e+0	At5g37780	CAM1 (CALMODULIN 1)	C.G.	S.X.	Please select
0.38	6e-61	234	rbags17k13_s_at	rbags17k13	-	-	4e+0	At5g37780	CAM1 (CALMODULIN 1)	C.G.	S.X.	Please select
0.04	1e-12	73	Contig8527_at	Contig8527	-	-	7e-1	At1g80820	CCR2 (CINNAMOYL COA REDUCTASE)	C.G.	S.X.	Please select
0.04	1e-12	73	Contig11338_at	Contig11338	-	-	2e-4	At5g58490	cinnamoyl-CoA reductase family	C.G.	S.X.	Please select
0.14	5e-12	71	Contig18594_at	Contig18594	-	-	1e-1	At4g28250	ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3)	C.G.	S.X.	Please select
0.04	3e-10	65	Contig2384_at	Contig2384	-	-	2e-1	At5g25570	unknown protein	C.G.	S.X.	Please select
0.03	3e-7	56	Contig3928_s_at	Contig3928	-	-	1e-14	At1g51410	cinnamyl-alcohol dehydrogenase, putative (CAD)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	4e-2	40	Arabidopsis thaliana	At1g76470	843980	3-beta-hydroxy-delta5-steroid dehydrogenase/ binding / catalytic/ cinnamoyl-CoA reductase	F:3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, steroid biosynthetic process, metabolic process;C:endomembrane system;OBPFMAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	6e-2	40	Glycine max	Gma.1445.3.S1_a_at	BE805686	-	-	9e-10	At1g15950	CCR1 (CINNAMOYL COA REDUCTASE 1)	C.G.	S.X.	Please select
0.63	5e-148	525	Oryza sativa	Os06g0623300	AK102436.1	-	Conserved hypothetical protein	6e-1	At2g33600	cinnamoyl-CoA reductase family	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e-5	52	Populus trichocarpa	PtpAffx.51327.3.S1_at	CV245418	hypothetical protein	-	3e-1	At5g02360	DC1 domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.80	0	1513	Triticum aestivum	Ta.28358.1.S1_at	CA632030	-	-	3e-3	At1g76470	3-beta-hydroxy-delta5-steroid dehydrogenase/ binding / catalytic/ cinnamoyl-CoA reductase	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1618358_at	CD715932	-	-	3e-1	At5g46780	VQ motif-containing protein	C.G.	S.X.	Please select
0.48	3e-44	178	Zea mays	Zm.3297.1.A1_at	BM380456	dihydroflavonol-4-reductase	-	7e-1	At4g01360	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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