CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig4366_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 94.0 Contig4366_at Contig4366 - - 5e-16 At5g49810 MMT S.X. H.G.
0.67 84.7 Contig25764_at Contig25764 - - 2e-6 At5g19160 unknown protein S.X. H.G.
0.67 84.7 Contig2575_s_at Contig2575 - - 2e-1 At4g27540 PRA1.H (PRENYLATED RAB ACCEPTOR 1.H) S.X. H.G.
0.60 77.3 Contig8678_s_at Contig8678 - - 3e-17 At1g31230 AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I) S.X. H.G.
0.60 77.3 Contig4660_s_at Contig4660 - - 2e-14 At1g61700 DNA-directed RNA polymerase II, putative (RPB10) S.X. H.G.
0.55 72.0 Contig3100_at Contig3100 - - 1e-5 At4g16830 nuclear RNA-binding protein (RGGA) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.4 98.5 GSM372955 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.1 98.0 GSM160464 drought control rep1 GSE6990 Barley drought stress
5.8 97.8 GSM160744 drought control rep2 GSE6990 Barley drought stress
5.7 97.7 GSM160815 drought control rep3 GSE6990 Barley drought stress
5.0 97.2 GSM146359 Golden Promise Root Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.5 96.7 GSM160822 38% SWC rep3 GSE6990 Barley drought stress
4.4 96.6 GSM160819 38% SWC rep1 GSE6990 Barley drought stress
4.4 96.6 GSM146358 Golden Promise Root Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.3 96.4 GSM372952 genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2 96.3 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-26 121 Contig17399_at Contig17399 - - 3e-1 At3g51210 flavonol 3-sulfotransferase-related C.G. S.X.
0.01 6e-2 40 Contig22050_at Contig22050 - - 1e+0 At2g28570 unknown protein C.G. S.X.
0.01 9e-1 36 Contig7800_at Contig7800 - - 2e-33 At5g53300 UBC10 (ubiquitin-conjugating enzyme 10) C.G. S.X.
0.01 9e-1 36 HB23O15r_s_at HB23O15r - - 5e-1 At2g05370 - C.G. S.X.
0.01 9e-1 36 Contig9990_at Contig9990 - - 5e-20 At3g29090 pectinesterase family protein C.G. S.X.
0.01 9e-1 36 Contig6702_at Contig6702 - - 1e-1 At1g44085 glycine-rich protein C.G. S.X.
0.01 9e-1 36 Contig3668_at Contig3668 - - 5e-1 At5g02030 RPL (REPLUMLESS) C.G. S.X.
0.01 9e-1 36 Contig1601_at Contig1601 - - 3e-5 At3g04230 40S ribosomal protein S16 (RPS16B) C.G. S.X.
0.01 3e+0 34 Contig9414_at Contig9414 - - 1e+0 At5g08000 E13L3 (GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 5e-16 87 Arabidopsis thaliana At5g49810 835044 MMT Arabidopsis thaliana methionine S-methyltransferase, an enzyme that catalyzes S -methylmethionine formation. - - - C.G. S.X.
0.01 3e+0 36 Glycine max GmaAffx.85754.1.S1_at BQ134139 - - 1e+0 At5g33355 - C.G. S.X.
0.77 0 2827 Oryza sativa Os05g0105000 AK121285.1 - Methionine S-methyltransferase (EC 2.1.1.12)(AdoMet:Met S- methyltransferase) (Hv-MMT1) 1e-29 At5g49810 MMT C.G. S.X.
0.05 5e-14 81 Populus trichocarpa PtpAffx.51365.1.S1_at CV268792 - - 3e-14 At5g49810 MMT C.G. S.X.
0.72 0 1719 Triticum aestivum Ta.507.1.S1_at BJ310647 - - 7e-2 At5g49810 MMT C.G. S.X.
0.01 1e-1 38 Vitis vinifera 1611909_at CF405503 - - 4e+0 At5g36140 CYP716A2 C.G. S.X.
0.67 0 1487 Zea mays Zm.648.1.S1_at AF144079.1 S-adenosyl-L-methionine:L-methionine S-methyltransferase - 6e-19 At5g49810 MMT C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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