Gene omics information

Query gene ID	Contig4350_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	75.8	Contig4350_s_at	Contig4350	-	-	2e-85	At2g42790	CSY3 (citrate synthase 3)	S.X.	H.G.	Please select
0.50	66.9	Contig5894_s_at	Contig5894	-	-	3e-1	At5g33300	chromosome-associated kinesin-related	S.X.	H.G.	Please select
0.43	56.4	Contig17683_at	Contig17683	-	-	2e+0	At3g11730	ATFP8	S.X.	H.G.	Please select
0.43	56.4	HU09F16u_s_at	HU09F16u	-	-	8e-1	At2g30980	ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta)	S.X.	H.G.	Please select
0.33	42.6	Contig6217_at	Contig6217	-	-	5e-86	At5g19820	emb2734 (embryo defective 2734)	S.X.	H.G.	Please select
0.11	9.4	rbags18e07_s_at	rbags18e07	-	-	4e-1	At3g58170	BS14A (BET1P/SFT1P-LIKE PROTEIN 14A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.6	98.6	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.0	98.4	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.8	98.3	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.3	98.1	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.6	97.7	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.6	97.7	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.0	97.2	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.9	97.1	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.8	97.0	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.8	97.0	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.99	0	3667	Contig4350_at	Contig4350	-	-	2e-85	At2g42790	CSY3 (citrate synthase 3)	C.G.	S.X.	Please select
0.01	5e-1	36	Contig15527_at	Contig15527	-	-	7e-1	At4g17215	unknown protein	C.G.	S.X.	Please select
0.01	5e-1	36	Contig12731_at	Contig12731	-	-	2e-4	At3g59380	FTA (FARNESYLTRANSFERASE A)	C.G.	S.X.	Please select
0.01	5e-1	36	Contig18341_at	Contig18341	-	-	7e-1	At5g23060	CaS (Calcium sensing receptor)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig7851_s_at	Contig7851	-	-	3e-1	At2g28720	histone H2B, putative	C.G.	S.X.	Please select
0.01	2e+0	34	Contig1803_at	Contig1803	-	-	1e-19	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig1464_x_at	Contig1464	-	-	4e-1	At3g14180	transcription factor	C.G.	S.X.	Please select
0.01	2e+0	34	Contig16747_at	Contig16747	-	-	1e+0	At3g51430	YLS2	C.G.	S.X.	Please select
0.01	2e+0	34	Contig16030_at	Contig16030	-	-	2e-1	At1g60870	MEE9 (maternal effect embryo arrest 9)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.43	2e-85	317	Arabidopsis thaliana	At2g42790	818879	CSY3 (citrate synthase 3)	Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	2e-9	65	Glycine max	Gma.17592.1.S1_at	BE658279	Peroxisomal citrate synthase precursor	-	3e-45	At2g42790	CSY3 (citrate synthase 3)	C.G.	S.X.	Please select
0.61	0	1521	Oryza sativa	Os02g0232400	AK120755.1	-	Citrate synthase, glyoxysomal precursor (EC2.3.3.1) (GCS)	4e-74	At3g58750	CSY2 (citrate synthase 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.29	1e-49	198	Populus trichocarpa	PtpAffx.5281.1.S1_a_at	CV254803	hypothetical protein	-	7e-99	At2g42790	CSY3 (citrate synthase 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.79	0	2333	Triticum aestivum	Ta.970.1.S1_at	BQ236882	-	-	2e-54	At2g42790	CSY3 (citrate synthase 3)	C.G.	S.X.	Please select
0.08	1e-21	103	Vitis vinifera	1612913_at	BQ792733	similar to Citrate synthase, glyoxysomal	-	1e-46	At3g58750	CSY2 (citrate synthase 2)	C.G.	S.X.	Please select
0.67	0	1328	Zea mays	Zm.4932.1.S1_at	CA403184	-	-	9e-69	At2g42790	CSY3 (citrate synthase 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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