Gene omics information

Query gene ID	Contig4324_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig4324_at	Contig4324	-	-	8e+0	At4g26060	unknown protein	S.X.	H.G.	Please select
0.91	98.1	Contig10453_at	Contig10453	-	-	9e-1	At5g19485	transferase	S.X.	H.G.	Please select
0.77	90.8	Contig5969_at	Contig5969	-	-	7e-4	At1g64970	G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)	S.X.	H.G.	Please select
0.67	84.7	Contig13318_at	Contig13318	-	-	1e-2	At3g59010	pectinesterase family protein	S.X.	H.G.	Please select
0.60	77.3	Contig5966_at	Contig5966	-	-	9e-2	At4g33360	terpene cyclase/mutase-related	S.X.	H.G.	Please select
0.50	66.9	Contig11946_at	Contig11946	-	-	2e+0	At1g49950	DNA-binding protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.9	99.8	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
27.4	99.8	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
27.2	99.8	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
26.2	99.8	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
21.8	99.8	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
20.8	99.7	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
16.5	99.6	GSM282023	Malting_day4_Merit_rep3	GSE11200	Expression data from malting barley seeds
16.1	99.6	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
15.5	99.6	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
13.4	99.4	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	2074	Contig4324_s_at	Contig4324	-	-	8e+0	At4g26060	unknown protein	C.G.	S.X.	Please select
0.52	3e-81	301	Contig4326_s_at	Contig4326	-	-	8e+0	At4g25370	Clp amino terminal domain-containing protein	C.G.	S.X.	Please select
0.52	3e-81	301	Contig4326_at	Contig4326	-	-	8e+0	At4g25370	Clp amino terminal domain-containing protein	C.G.	S.X.	Please select
0.26	2e-26	119	Contig14498_at	Contig14498	-	-	9e-3	At2g43590	chitinase, putative	C.G.	S.X.	Please select
0.06	3e-4	46	Contig3578_at	Contig3578	-	-	6e+0	At1g15757	-	C.G.	S.X.	Please select
0.05	3e-4	46	Contig3576_at	Contig3576	-	-	1e-8	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.04	1e-3	44	Contig4174_at	Contig4174	-	-	6e-1	At4g01700	chitinase, putative	C.G.	S.X.	Please select
0.07	2e-2	40	Contig2519_x_at	Contig2519	-	-	9e-9	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.02	2e-2	40	Contig1819_s_at	Contig1819	-	-	2e-92	At4g18730	RPL16B	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e+0	32	Arabidopsis thaliana	At4g26060	828712	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-2	40	Glycine max	PsAffx.CL72Contig2_at	PsAffx.CL72Contig2	-	-	3e-1	At2g25190	unknown protein	C.G.	S.X.	Please select
0.38	1e-49	198	Oryza sativa	Os04g0494100	AB096140.1	-	Endochitinase A precursor (EC 3.2.1.14) (Seedchitinase A)	1e-1	At2g43590	chitinase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-3	44	Populus trichocarpa	Ptp.987.1.S1_at	BU895364	-	-	5e-29	At3g54420	ATEP3	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.75	0	1281	Triticum aestivum	Ta.2278.2.S1_at	CK196331	-	-	5e-2	At3g47540	chitinase, putative	C.G.	S.X.	Please select
0.06	3e-3	42	Vitis vinifera	1613461_s_at	AF532966.1	class IV chitinase	-	2e+0	At2g43590	chitinase, putative	C.G.	S.X.	Please select
0.37	5e-24	111	Zea mays	Zm.1595.1.S1_at	CD967190	endochitinase A	-	6e-1	At3g54420	ATEP3	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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