Gene omics information

Query gene ID	Contig4296_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig4296_at	Contig4296	-	-	5e-38	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	S.X.	H.G.	Please select
0.67	84.7	Contig3668_at	Contig3668	-	-	5e-1	At5g02030	RPL (REPLUMLESS)	S.X.	H.G.	Please select
0.67	84.7	Contig3961_at	Contig3961	-	-	1e+0	At3g29560	unknown protein	S.X.	H.G.	Please select
0.60	77.3	Contig6203_at	Contig6203	-	-	1e-3	At1g70110	lectin protein kinase family protein	S.X.	H.G.	Please select
0.60	77.3	Contig6213_at	Contig6213	-	-	8e-4	At1g05850	POM1 (POM-POM1)	S.X.	H.G.	Please select
0.59	75.8	Contig3118_at	Contig3118	-	-	3e-68	At3g27240	cytochrome c1, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.4	98.1	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.3	98.1	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.2	97.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.54	2e-78	291	Contig4294_s_at	Contig4294	-	-	1e-17	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	C.G.	S.X.	Please select
0.05	6e-5	48	Contig11844_at	Contig11844	-	-	2e+0	At2g05645	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	Contig13543_at	Contig13543	-	-	3e+0	At4g23520	cysteine proteinase, putative	C.G.	S.X.	Please select
0.02	2e-1	36	Contig10285_at	Contig10285	-	-	4e-2	At1g11560	OST3/OST6 family protein	C.G.	S.X.	Please select
0.03	2e-1	36	Contig4697_s_at	Contig4697	-	-	4e+0	At2g31490	unknown protein	C.G.	S.X.	Please select
0.01	9e-1	34	Contig7325_at	Contig7325	-	-	2e-14	At3g49080	ribosomal protein S9 family protein	C.G.	S.X.	Please select
0.02	9e-1	34	Contig19923_at	Contig19923	-	-	3e-1	At4g26950	unknown protein	C.G.	S.X.	Please select
0.02	9e-1	34	HT01A10w_at	HT01A10w	-	-	5e+0	At1g45243	DC1 domain-containing protein	C.G.	S.X.	Please select
0.03	9e-1	34	EBro08_SQ005_I06_at	EBro08_SQ005_I06	-	-	4e+0	At5g59440	ZEU1 (ZEUS1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	5e-38	159	Arabidopsis thaliana	At1g21720	838776	PBC1 (PROTEASOME BETA SUBUNIT C1)	20S proteasome beta subunit PBC1 truncated protein (PBC1)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.54	7e-47	188	Glycine max	GmaAffx.91569.1.S1_s_at	CF807294	-	-	7e-52	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	C.G.	S.X.	Please select
0.56	4e-160	565	Oryza sativa	Os06g0643100	AB026565.1	-	Proteasome subunit beta type 3 (EC 3.4.25.1) (20Sproteasome alpha subunit C) (20S proteasome subunitbeta-3)	3e-18	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.35	1e-23	111	Populus trichocarpa	Ptp.40.1.S1_at	CV261996	hypothetical protein	-	5e-38	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.75	0	1174	Triticum aestivum	Ta.14429.1.S1_a_at	BJ215467	-	-	1e-20	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	C.G.	S.X.	Please select
0.28	5e-35	147	Vitis vinifera	1616931_s_at	CF511798	similar to PBC1 (20S proteasome beta subunit C1); peptidase	-	5e-66	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	C.G.	S.X.	Please select
0.43	9e-87	319	Zea mays	Zm.13568.1.A1_at	AI714711	hypothetical protein LOC100272320	-	7e-12	At1g77440	PBC2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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