Gene omics information

Query gene ID	Contig4283_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig4283_at	Contig4283	-	-	9e-1	At2g40510	40S ribosomal protein S26 (RPS26A)	S.X.	H.G.	Please select
0.73	88.7	EBem09_SQ004_B23_s_at	EBem09_SQ004_B23	-	-	2e+0	At4g15750	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.67	84.7	Contig20987_at	Contig20987	-	-	1e-3	At4g02610	tryptophan synthase, alpha subunit, putative	S.X.	H.G.	Please select
0.67	84.7	Contig4282_at	Contig4282	-	-	2e+0	At4g09460	ATMYB6	S.X.	H.G.	Please select
0.60	77.3	Contig568_s_at	Contig568	GRP94 homologue	-	4e-2	At1g06240	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig19275_at	Contig19275	-	-	9e-5	At3g13850	LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.5	99.0	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.4	99.0	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.3	99.0	GSM261063	Xantha s-46 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.0	98.9	GSM261065	Xantha s-46 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.3	98.5	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.6	98.2	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.5	98.2	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.4	98.1	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.2	98.0	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.6	97.7	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	1e-106	387	Contig4282_at	Contig4282	-	-	2e+0	At4g09460	ATMYB6	C.G.	S.X.	Please select
0.02	2e-3	44	Contig9703_at	Contig9703	-	-	3e+0	At2g37200	integral membrane protein, putative	C.G.	S.X.	Please select
0.01	1e-1	38	Contig11580_at	Contig11580	-	-	3e-4	At3g08040	FRD3 (FERRIC REDUCTASE DEFECTIVE 3)	C.G.	S.X.	Please select
0.02	4e-1	36	HU01G14w_at	HU01G14w	-	-	2e-1	At4g28140	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.01	4e-1	36	Contig7509_at	Contig7509	-	-	1e-51	At1g11430	plastid developmental protein DAG, putative	C.G.	S.X.	Please select
0.02	4e-1	36	HM14H20r_at	HM14H20r	-	-	4e+0	At4g20390	integral membrane family protein	C.G.	S.X.	Please select
0.01	4e-1	36	HV_CEb0009B15r2_at	HV_CEb0009B15r2	-	-	8e-11	At1g09530	PIF3 (PHYTOCHROME INTERACTING FACTOR 3)	C.G.	S.X.	Please select
0.01	4e-1	36	Contig24233_at	Contig24233	-	-	1e-1	At1g63855	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig4333_at	Contig4333	-	-	6e-10	At1g64520	RPN12a (Regulatory Particle non-ATPase 12a)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	9e-1	36	Arabidopsis thaliana	At2g40510	818646	40S ribosomal protein S26 (RPS26A)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, ribosome, chloroplast;MFOPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	GmaAffx.11213.1.A1_at	CD413123	-	-	1e-11	At3g55240	-	C.G.	S.X.	Please select
0.28	2e-55	218	Oryza sativa	Os03g0243600	AK072916.1	-	Acyl-coA-binding protein, ACBP family protein	5e-9	At1g54215	proline-rich family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e-1	38	Populus trichocarpa	PtpAffx.223948.1.S1_s_at	pmrna42174	hypothetical protein	-	2e-1	At4g35100	PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.44	7e-122	438	Triticum aestivum	Ta.21081.1.S1_a_at	CA691676	-	-	2e+0	At4g00270	DNA-binding storekeeper protein-related	C.G.	S.X.	Please select
0.02	3e-1	36	Vitis vinifera	1610594_at	BQ796370	hypothetical protein LOC100250952	-	3e+0	At2g04630	NRPB6B	C.G.	S.X.	Please select
0.27	1e-59	230	Zea mays	Zm.13680.1.S1_at	CF021625	hypothetical protein LOC100274428	-	4e-2	At3g02160	DNA binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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