Gene omics information

Query gene ID Contig4268_s_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9198.1Contig4268_s_atContig4268--3e-49At5g23250succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putativeS.X.H.G.
0.6784.7Contig3205_atContig3205--3e-7At4g14710acireductone dioxygenase [iron(II)-requiring]/ metal ion bindingS.X.H.G.
0.5369.7Contig4907_s_atContig4907--5e-4At1g66340ETR1 (ETHYLENE RESPONSE 1)S.X.H.G.
0.5066.9Contig5696_atContig5696--7e-3At5g48335unknown proteinS.X.H.G.
0.4458.9Contig3920_atContig3920--3e-21At5g01410RSR4 (REDUCED SUGAR RESPONSE 4)S.X.H.G.
0.3647.1Contig3961_atContig3961--1e+0At3g29560unknown proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
12.999.4GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
11.299.2GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
11.099.2GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.795.5GSM282021Malting_day4_Legacy_rep 2GSE11200Expression data from malting barley seeds
3.294.3GSM282023Malting_day4_Merit_rep3GSE11200Expression data from malting barley seeds
3.093.8GSM431572pathogen isolates: Polymyxa betae - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.093.8GSM238438Embryo 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grains
3.093.8GSM282024Malting_day4_Merit_rep2GSE11200Expression data from malting barley seeds
3.093.8GSM282039Malting_day4_Morex_rep2GSE11200Expression data from malting barley seeds
2.993.4GSM282035Malting_day4_Morex_rep1GSE11200Expression data from malting barley seeds
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.031e-344Contig16654_s_atContig16654--4e+0At4g17905ATL4HC.G.S.X.
0.025e-342Contig25433_atContig25433--6e+0At5g38720unknown proteinC.G.S.X.
0.012e-240Contig8045_atContig8045--2e-1At5g58200unknown proteinC.G.S.X.
0.018e-238Contig9016_atContig9016--9e-7At5g22070unknown proteinC.G.S.X.
0.028e-238Contig12783_atContig12783--1e-1At2g03310unknown proteinC.G.S.X.
0.018e-238Contig5374_atContig5374--3e+0At3g23170unknown proteinC.G.S.X.
0.023e-136Contig16048_atContig16048--8e-1At1g24880UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylaseC.G.S.X.
0.013e-136Contig7325_atContig7325--2e-14At3g49080ribosomal protein S9 family proteinC.G.S.X.
0.013e-136Contig5351_atContig5351--2e-1At1g48450unknown proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.533e-49196Arabidopsis thalianaAt5g23250832389succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putativeF:succinate-CoA ligase (ADP-forming) activity, succinate-CoA ligase (GDP-forming) activity, binding, ATP citrate synthase activity, catalytic activity;P:metabolic process;C:mitochondrion;OBMAFP---C.G.S.X.
0.412e-48194Glycine maxGmaAffx.1301.39.S1_atBI785728--3e-31At5g23250succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putativeC.G.S.X.
0.6901285Oryza sativaOs.38799.1.S1_at---0C.G.S.X.
0.427e-57222Populus trichocarpaPtp.1954.1.S1_atCV274512hypothetical protein-5e-113At5g08300succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putativeC.G.S.X.
0.8802123Triticum aestivumTa.5528.1.S1_atCA601949--1e-48At5g23250succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putativeC.G.S.X.
0.491e-116418Vitis vinifera1612015_atCF215100hypothetical protein LOC100261494-4e-98At5g08300succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putativeC.G.S.X.
0.590737Zea maysZm.6083.1.A1_atCF629354Hypothetical protein LOC100216609-1e-61At5g08300succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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