Gene omics information

Query gene ID	Contig4240_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig4240_s_at	Contig4240	-	-	3e-3	At5g28630	glycine-rich protein	S.X.	H.G.	Please select
0.67	84.7	Contig7764_at	Contig7764	-	-	2e-31	At4g34450	coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative	S.X.	H.G.	Please select
0.50	66.9	Contig6229_s_at	Contig6229	-	-	7e-7	At2g40930	UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5)	S.X.	H.G.	Please select
0.50	66.9	Contig5710_at	Contig5710	-	-	6e-7	At4g36910	LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)	S.X.	H.G.	Please select
0.46	61.0	Contig680_at	Contig680	-	-	1e-99	At4g30190	AHA2	S.X.	H.G.	Please select
0.40	53.1	Contig12867_at	Contig12867	-	-	9e-41	At1g34430	EMB3003 (embryo defective 3003)	S.X.	H.G.	Please select
0.33	42.6	HA03M05u_s_at	HA03M05u	-	-	2e-7	At3g20390	endoribonuclease L-PSP family protein	S.X.	H.G.	Please select
0.33	42.6	rbags17a06_s_at	rbags17a06	-	-	1e+0	At5g42300	UBL5 (UBIQUITIN-LIKE PROTEIN 5)	S.X.	H.G.	Please select
0.27	32.1	Contig5857_at	Contig5857	-	-	2e-1	At1g02965	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.4	97.5	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.8	97.0	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.7	96.9	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.4	96.6	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.4	96.6	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.4	96.6	GSM71140	OWB-D stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.1	96.2	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	0	1094	Contig4242_at	Contig4242	-	-	3e-1	At5g03230	unknown protein	C.G.	S.X.	Please select
0.02	4e-4	46	Contig1648_at	Contig1648	-	-	3e-18	At1g66200	ATGSR2	C.G.	S.X.	Please select
0.02	4e-4	46	Contig13118_at	Contig13118	-	-	2e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	C.G.	S.X.	Please select
0.02	2e-3	44	Contig23928_at	Contig23928	-	-	2e-2	At5g28630	glycine-rich protein	C.G.	S.X.	Please select
0.02	6e-3	42	EBro08_SQ003_C15_at	EBro08_SQ003_C15	-	-	2e-2	At3g21850	ASK9 (ARABIDOPSIS SKP1-LIKE 9)	C.G.	S.X.	Please select
0.02	3e-2	40	Contig3807_at	Contig3807	-	-	7e-9	At4g22220	ISU1	C.G.	S.X.	Please select
0.02	3e-2	40	Contig3209_s_at	Contig3209	-	-	3e-1	At5g11500	unknown protein	C.G.	S.X.	Please select
0.02	3e-2	40	Contig10041_at	Contig10041	-	-	8e-29	At2g20280	zinc finger (CCCH-type) family protein	C.G.	S.X.	Please select
0.02	3e-2	40	Contig8919_x_at	Contig8919	-	-	7e-3	At5g28630	glycine-rich protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-3	44	Arabidopsis thaliana	At5g28630	832966	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-2	42	Glycine max	GmaAffx.51977.1.S1_at	CA798995	-	-	1e-18	At5g35170	adenylate kinase family protein	C.G.	S.X.	Please select
0.47	0	799	Oryza sativa	Os03g0843300	AK101917.1	-	Late embryogenesis abundant protein 2 familyprotein	1e-5	At2g44060	late embryogenesis abundant family protein / LEA family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e-3	46	Populus trichocarpa	PtpAffx.205038.1.S1_at	pmrna9976	hypothetical protein	-	5e-3	At5g42780	AtHB27 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 27)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.78	0	1425	Triticum aestivum	Ta.1531.2.S1_a_at	BJ265522	-	-	3e+0	At5g39230	transcription initiation factor-related	C.G.	S.X.	Please select
0.02	6e-2	38	Vitis vinifera	1615188_at	CB974599	-	-	9e-1	At3g02310	SEP2 (SEPALLATA 2)	C.G.	S.X.	Please select
0.47	0	749	Zea mays	Zm.5983.1.S1_at	CF024039	hypothetical protein LOC100191638	-	3e+0	At5g39230	transcription initiation factor-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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