Gene omics information

Query gene ID	Contig4218_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	72.0	Contig4218_at	Contig4218	-	-	1e-19	At1g26270	phosphatidylinositol 3- and 4-kinase family protein	S.X.	H.G.	Please select
0.61	78.7	Contig2828_at	Contig2828	-	-	2e-50	At5g63400	ADK1 (ADENYLATE KINASE 1)	S.X.	H.G.	Please select
0.44	58.9	Contig2940_s_at	Contig2940	-	-	5e-6	At2g47380	cytochrome c oxidase subunit Vc family protein / COX5C family protein	S.X.	H.G.	Please select
0.43	56.4	Contig19935_at	Contig19935	-	-	2e-6	At3g58000	VQ motif-containing protein	S.X.	H.G.	Please select
0.43	56.4	Contig4893_at	Contig4893	-	-	2e-25	At3g02780	IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2)	S.X.	H.G.	Please select
0.42	55.2	Contig8718_at	Contig8718	-	-	7e+0	Atmg00150	-	S.X.	H.G.	Please select
0.40	53.1	HVSMEm0005B11r2_x_at	HVSMEm0005B11r2	-	-	4e+0	At2g36020	HVA22J (HVA22-LIKE PROTEIN J)	S.X.	H.G.	Please select
0.37	47.9	Contig2821_at	Contig2821	-	-	1e-72	At3g11630	2-cys peroxiredoxin, chloroplast (BAS1)	S.X.	H.G.	Please select
0.29	35.5	Contig3120_at	Contig3120	-	-	4e-2	At4g20260	DREPP plasma membrane polypeptide family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.1	99.7	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
18.8	99.7	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
17.5	99.6	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
14.3	99.5	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
11.2	99.2	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
11.2	99.2	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
10.7	99.2	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
10.7	99.2	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
9.8	99.1	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
8.4	98.8	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	2e-29	131	Contig6594_at	Contig6594	-	-	2e-15	At2g03890	phosphatidylinositol 3- and 4-kinase family protein	C.G.	S.X.	Please select
0.10	2e-16	87	Contig6767_s_at	Contig6767	-	-	2e-11	At1g13640	phosphatidylinositol 3- and 4-kinase family protein	C.G.	S.X.	Please select
0.01	2e-1	38	Contig7744_at	Contig7744	-	-	1e-4	At1g29330	ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2)	C.G.	S.X.	Please select
0.01	2e-1	38	Contig5344_at	Contig5344	-	-	2e-8	At5g01220	SQD2 (sulfoquinovosyldiacylglycerol 2)	C.G.	S.X.	Please select
0.01	2e-1	38	Contig11239_at	Contig11239	-	-	7e-2	At1g55900	TIM50	C.G.	S.X.	Please select
0.01	2e-1	38	Contig11238_at	Contig11238	-	-	9e-2	At1g55900	TIM50	C.G.	S.X.	Please select
0.01	7e-1	36	Contig3277_at	Contig3277	-	-	1e-46	At5g57655	xylose isomerase family protein	C.G.	S.X.	Please select
0.01	7e-1	36	Contig3281_s_at	Contig3281	-	-	2e-45	At5g57655	xylose isomerase family protein	C.G.	S.X.	Please select
0.01	7e-1	36	Contig1125_x_at	Contig1125	-	-	1e-22	At1g07790	HTB1	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	1e-19	99	Arabidopsis thaliana	At1g26270	839168	phosphatidylinositol 3- and 4-kinase family protein	F:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:unknown;C:cellular_component unknown;MPOFB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	5e-1	38	Glycine max	GmaAffx.91538.1.S1_s_at	CF807263	transcription factor /// WRKY52 protein	-	2e-36	At3g58710	WRKY69	C.G.	S.X.	Please select
0.53	0	1417	Oryza sativa	Os09g0474800	AK066715.1	-	Phosphatidylinositol 3- and 4-kinase domaincontaining protein	5e-10	At1g26270	phosphatidylinositol 3- and 4-kinase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	2e-12	75	Populus trichocarpa	PtpAffx.216912.1.S1_at	pmrna31979	hypothetical protein	-	7e-20	At1g13640	phosphatidylinositol 3- and 4-kinase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.91	0	3578	Triticum aestivum	Ta.2968.1.S1_at	BJ286625	-	-	1e-22	At1g26270	phosphatidylinositol 3- and 4-kinase family protein	C.G.	S.X.	Please select
0.01	1e-1	38	Vitis vinifera	1619140_at	CF606031	hypothetical protein LOC100246049	-	4e-4	At2g35270	DNA-binding protein-related	C.G.	S.X.	Please select
0.48	0	837	Zea mays	Zm.5275.1.A1_at	CF011385	hypothetical protein LOC100192527	-	5e-9	At1g13640	phosphatidylinositol 3- and 4-kinase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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