CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig4175_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig4175_at Contig4175 - - 1e-19 At3g07100 protein transport protein Sec24, putative S.X. H.G.
0.80 92.5 Contig4760_s_at Contig4760 - - 1e+0 At4g38700 disease resistance-responsive family protein S.X. H.G.
0.73 88.7 Contig5297_at Contig5297 - - 4e-16 At1g64550 ATGCN3 S.X. H.G.
0.71 87.1 Contig11464_at Contig11464 - - 6e-20 At1g55740 AtSIP1 (Arabidopsis thaliana seed imbibition 1) S.X. H.G.
0.67 84.7 Contig5117_at Contig5117 - - 8e-2 At5g60500 undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein S.X. H.G.
0.61 78.7 Contig6995_at Contig6995 - - 2e-8 At5g57270 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.7 98.3 GSM372945 genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.3 96.4 GSM372946 genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2 96.3 GSM382237 Root_Control3 GSE15295 Mercury toxicity in barley roots
3.9 95.8 GSM440960 Stressed lemma_Rep1 GSE17669 Gene expression in the barley spike during drought stress
3.8 95.7 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.8 95.7 GSM372966 genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6 95.3 GSM382233 Root_Hg2 GSE15295 Mercury toxicity in barley roots
3.4 94.8 GSM372952 genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.4 94.8 GSM382235 Root_Control1 GSE15295 Mercury toxicity in barley roots
3.2 94.3 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 1e-174 613 Contig4174_at Contig4174 - - 6e-1 At4g01700 chitinase, putative C.G. S.X.
0.01 6e-1 36 HV_CEb0015I04r2_at HV_CEb0015I04r2 - - 4e+0 At5g53660 AtGRF7 (GROWTH-REGULATING FACTOR 7) C.G. S.X.
0.01 6e-1 36 rbaal17j15_at rbaal17j15 - - 1e+0 At5g50040 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.01 6e-1 36 Contig24209_at Contig24209 - - 2e-6 At4g01880 methyltransferase C.G. S.X.
0.01 2e+0 34 HVSMEa0004C17r2_at HVSMEa0004C17r2 - - 3e-1 At5g42900 unknown protein C.G. S.X.
0.01 2e+0 34 Contig4641_s_at Contig4641 - - 2e-3 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.01 2e+0 34 Contig6104_at Contig6104 - - 1e-3 At3g57520 AtSIP2 (Arabidopsis thaliana seed imbibition 2) C.G. S.X.
0.01 2e+0 34 HVSMEk0009P03r2_at HVSMEk0009P03r2 - - 5e-9 At5g57140 PAP28 (PURPLE ACID PHOSPHATASE 28) C.G. S.X.
0.01 2e+0 34 Contig3705_at Contig3705 - - 7e-3 At3g06860 MFP2 (MULTIFUNCTIONAL PROTEIN 2) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 1e-19 99 Arabidopsis thaliana At3g07100 819896 protein transport protein Sec24, putative F:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFBOPVA - - - C.G. S.X.
0.18 1e-25 119 Glycine max GmaAffx.76737.1.S1_at BF324681 - - 4e-36 At3g07100 protein transport protein Sec24, putative C.G. S.X.
0.59 0 2189 Oryza sativa Os04g0129500 AK071986.1 - Sec23/Sec24 zinc finger domain containing protein 7e-31 At3g07100 protein transport protein Sec24, putative C.G. S.X.
0.19 6e-19 97 Populus trichocarpa PtpAffx.207677.1.S1_s_at pmrna15246 hypothetical protein - 2e-73 At3g07100 protein transport protein Sec24, putative C.G. S.X.
0.80 0 2660 Triticum aestivum TaAffx.6598.1.S1_at CD938071 - - 1e-19 At3g07100 protein transport protein Sec24, putative C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1621163_at BQ799269 hypothetical protein LOC100253488 - 1e-6 At5g58490 cinnamoyl-CoA reductase family C.G. S.X.
0.69 0 1588 Zea mays Zm.6026.1.S1_at CA405322 hypothetical protein LOC100194158 - 7e-21 At3g07100 protein transport protein Sec24, putative C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage