Gene omics information

Query gene ID	Contig4172_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.1	Contig4172_at	Contig4172	-	-	2e-2	At3g52090	NRPB11	S.X.	H.G.	Please select
0.55	72.0	Contig1013_s_at	Contig1013	-	-	2e-149	At2g39730	RCA (RUBISCO ACTIVASE)	S.X.	H.G.	Please select
0.53	69.7	Contig8299_at	Contig8299	-	-	3e-9	At3g20650	mRNA capping enzyme family protein	S.X.	H.G.	Please select
0.50	66.9	Contig4647_at	Contig4647	-	-	3e-3	At2g37990	ribosome biogenesis regulatory protein (RRS1) family protein	S.X.	H.G.	Please select
0.40	53.1	Contig5510_s_at	Contig5510	-	-	1e-1	At5g04250	OTU-like cysteine protease family protein	S.X.	H.G.	Please select
0.40	53.1	Contig15070_at	Contig15070	-	-	1e-2	At4g10810	unknown protein	S.X.	H.G.	Please select
0.33	42.6	Contig8629_at	Contig8629	-	-	3e-6	At2g17190	ubiquitin family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.7	98.3	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.8	97.0	GSM161220	cold treatment rep2	GSE6993	Barley low temperature stress
4.8	97.0	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
4.6	96.8	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
4.6	96.8	GSM68896	8 h control replicate 2	GSE3097	Barley1 salinity stress study
4.4	96.6	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
4.4	96.6	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.4	96.6	GSM68890	3 h control replicate 2	GSE3097	Barley1 salinity stress study
4.3	96.4	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.2	96.3	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.38	1e-153	541	Contig4171_at	Contig4171	-	-	1e-1	At3g52090	NRPB11	C.G.	S.X.	Please select
0.50	2e-118	424	rbasd21g03_s_at	rbasd21g03	-	-	8e+0	At4g39900	unknown protein	C.G.	S.X.	Please select
0.03	1e-2	40	Contig11799_at	Contig11799	-	-	1e-1	At1g16640	transcriptional factor B3 family protein	C.G.	S.X.	Please select
0.01	2e-1	36	Contig6634_at	Contig6634	-	-	9e-4	At3g09470	-	C.G.	S.X.	Please select
0.02	7e-1	34	Contig15869_at	Contig15869	-	-	5e-1	At1g32240	KAN2 (KANADI 2)	C.G.	S.X.	Please select
0.03	7e-1	34	HVSMEn0023M22r2_at	HVSMEn0023M22r2	-	-	1e+0	At1g46408	AGL97 (AGAMOUS-LIKE 97)	C.G.	S.X.	Please select
0.02	7e-1	34	Contig12653_at	Contig12653	-	-	6e-3	At3g13460	ECT2	C.G.	S.X.	Please select
0.02	7e-1	34	Contig11176_at	Contig11176	-	-	3e-6	At2g25670	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	Contig7405_at	Contig7405	-	-	1e-2	At2g18770	signal recognition particle binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	2e-2	40	Arabidopsis thaliana	At3g52090	824372	NRPB11	Non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB11 and the E. oli RNA polymerase alpha subunit.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.19	1e-4	48	Glycine max	GmaAffx.26209.1.S1_at	BE190505	-	-	4e-15	At3g52090	NRPB11	C.G.	S.X.	Please select
0.41	2e-66	254	Oryza sativa	Os07g0172500	AK068132.1	-	DNA-directed RNA polymerase II 13.6 kDapolypeptide (EC 2.7.7.6)	2e+0	At3g52090	NRPB11	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.24	6e-13	75	Populus trichocarpa	PtpAffx.204807.1.S1_at	pmrna9475	hypothetical protein	-	3e-39	At3g52090	NRPB11	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.68	1e-176	619	Triticum aestivum	Ta.864.2.S1_x_at	BJ263177	-	-	1e-4	At3g52090	NRPB11	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1621594_at	CA814418	-	-	4e-4	At1g22780	PFL (POINTED FIRST LEAVES)	C.G.	S.X.	Please select
0.04	4e-2	38	Zea mays	Zm.13585.1.S1_at	AY107846.1	hypothetical protein LOC100274237	-	2e+0	At4g11060	MTSSB (mitochondrially targeted single-stranded DNA binding protein)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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