Gene omics information

Query gene ID	Contig4157_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	Contig4157_at	Contig4157	-	-	1e-25	At1g60780	HAP13 (HAPLESS 13)	S.X.	H.G.	Please select
0.77	90.8	Contig6618_at	Contig6618	-	-	4e-1	At5g51180	unknown protein	S.X.	H.G.	Please select
0.59	75.8	Contig9016_at	Contig9016	-	-	9e-7	At5g22070	unknown protein	S.X.	H.G.	Please select
0.46	61.0	Contig1356_s_at	Contig1356	-	-	4e+0	At4g02450	glycine-rich protein	S.X.	H.G.	Please select
0.38	49.5	Contig6619_at	Contig6619	-	-	2e-3	At5g51180	unknown protein	S.X.	H.G.	Please select
0.25	28.9	Contig5753_at	Contig5753	-	-	3e-1	At1g04501	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.2	98.5	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
6.8	98.3	GSM261035	Dicktoo-chilling-rep3	GSE10329	Low temperature stress in cv. Dicktoo
6.7	98.3	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.6	98.2	GSM261034	Dicktoo-chilling-rep2	GSE10329	Low temperature stress in cv. Dicktoo
6.2	98.0	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
6.1	98.0	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
6.1	98.0	GSM68901	27 h control replicate 1	GSE3097	Barley1 salinity stress study
5.7	97.7	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
5.4	97.5	GSM261027	ABA-Late-rep1	GSE10328	ABA experiment
5.3	97.4	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	1080	Contig4157_s_at	Contig4157	-	-	1e-25	At1g60780	HAP13 (HAPLESS 13)	C.G.	S.X.	Please select
0.44	0	874	Contig4158_at	Contig4158	-	-	8e-63	At1g60780	HAP13 (HAPLESS 13)	C.G.	S.X.	Please select
0.16	7e-19	93	Contig4159_at	Contig4159	-	-	2e-60	At1g60780	HAP13 (HAPLESS 13)	C.G.	S.X.	Please select
0.03	9e-3	40	Contig18647_at	Contig18647	-	-	2e-3	At5g05310	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Contig16182_at	Contig16182	-	-	8e-5	At2g14720	VSR-2	C.G.	S.X.	Please select
0.03	5e-1	34	HVSMEf0011A08r2_at	HVSMEf0011A08r2	-	-	4e+0	At1g20740	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	HV_CEb0021B22r2_at	HV_CEb0021B22r2	-	-	9e-1	At1g44000	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig12037_at	Contig12037	-	-	2e-4	At5g22300	NIT4 (NITRILASE 4)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig10643_at	Contig10643	-	-	1e-1	At1g48140	dolichol-phosphate mannosyltransferase-related	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	1e-25	117	Arabidopsis thaliana	At1g60780	842372	HAP13 (HAPLESS 13)	F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:clathrin vesicle coat, clathrin adaptor complex;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	1e-7	57	Glycine max	Gma.3839.1.S1_a_at	CD391787	-	-	2e-69	At1g60780	HAP13 (HAPLESS 13)	C.G.	S.X.	Please select
0.25	5e-72	272	Oryza sativa	Os01g0703600	AK065538.1	-	Mu1 adaptin	1e-67	At1g60780	HAP13 (HAPLESS 13)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	7e-9	61	Populus trichocarpa	PtpAffx.5908.1.S1_at	CV229864	hypothetical protein	-	6e-37	At1g60780	HAP13 (HAPLESS 13)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.41	3e-140	498	Triticum aestivum	Ta.1235.1.S1_at	BQ166015	-	-	2e-75	At1g60780	HAP13 (HAPLESS 13)	C.G.	S.X.	Please select
0.19	4e-19	93	Vitis vinifera	1622840_at	CF213749	hypothetical protein LOC100251026	-	3e-39	At1g60780	HAP13 (HAPLESS 13)	C.G.	S.X.	Please select
0.17	2e-52	204	Zea mays	Zm.14288.1.A1_at	BM348960	-	-	1e-37	At1g60780	HAP13 (HAPLESS 13)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage