CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig4143_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 94.0 Contig4143_at Contig4143 - - 5e-1 At3g06778 heat shock protein binding / unfolded protein binding S.X. H.G.
0.83 94.0 Contig3558_s_at Contig3558 - - 2e-15 At1g24510 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative S.X. H.G.
0.80 92.5 Contig21617_at Contig21617 - - 3e-1 At4g31470 pathogenesis-related protein, putative S.X. H.G.
0.80 92.5 Contig4072_at Contig4072 - - 2e+0 At2g31610 40S ribosomal protein S3 (RPS3A) S.X. H.G.
0.67 84.7 Contig30_s_at Contig30 - - 4e-19 At5g59690 histone H4 S.X. H.G.
0.55 72.0 HD13H12r_s_at HD13H12r - - 2e-1 At3g28710 H+-transporting two-sector ATPase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.4 99.5 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.2 98.0 GSM261067 Xantha s-46 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.1 98.0 GSM261061 Xantha b-12 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.9 97.1 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.4 96.6 GSM261034 Dicktoo-chilling-rep2 GSE10329 Low temperature stress in cv. Dicktoo
4.3 96.4 GSM398258 Martin_5d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.3 96.4 GSM398281 Moroc9-75_5d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.0 96.0 GSM398282 Moroc9-75_5d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.0 96.0 GSM419976 Palea_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
4.0 96.0 GSM440964 Control palea_Rep2 GSE17669 Gene expression in the barley spike during drought stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e-1 36 Contig11216_at Contig11216 - - 9e-10 At3g11450 DNAJ heat shock N-terminal domain-containing protein / cell division protein-related C.G. S.X.
0.02 1e+0 34 EBro08_SQ007_I17_at EBro08_SQ007_I17 - - 3e+0 At2g31410 unknown protein C.G. S.X.
0.01 1e+0 34 Contig14281_at Contig14281 - - 2e-16 At1g24610 SET domain-containing protein C.G. S.X.
0.03 1e+0 34 HS16L13u_at HS16L13u - - 6e+0 At4g02250 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.02 1e+0 34 Contig2419_s_at Contig2419 - - 3e-7 At1g54290 eukaryotic translation initiation factor SUI1, putative C.G. S.X.
0.02 4e+0 32 HVSMEg0009K07r2_s_at HVSMEg0009K07r2 - - 4e+0 At5g22520 unknown protein C.G. S.X.
0.02 4e+0 32 Contig12089_at Contig12089 - - 1e-13 At2g34860 EDA3 (embryo sac development arrest 3) C.G. S.X.
0.02 4e+0 32 Contig21256_at Contig21256 - - 7e-2 At1g08630 THA1 (Threonine Aldolase 1) C.G. S.X.
0.02 4e+0 32 Contig19535_at Contig19535 - - 1e-1 At3g04360 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-1 36 Arabidopsis thaliana At3g06778 5007987 heat shock protein binding / unfolded protein binding F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAV - - - C.G. S.X.
0.02 8e-1 36 Glycine max Gma.14351.2.S1_at CA785562 - - 3e+0 At5g10300 MES5 (METHYL ESTERASE 5) C.G. S.X.
0.13 5e-15 83 Oryza sativa Os10g0494800 AK111538.1 - Katanin p80 subunit 2e-18 At5g08390 - C.G. S.X.
0.02 3e+0 34 Populus trichocarpa PtpAffx.4473.6.S1_at CV263098 hypothetical protein - 3e+0 At5g17470 calmodulin-related protein, putative C.G. S.X.
0.58 0 634 Triticum aestivum TaAffx.50026.2.S1_at CA745616 - - 4e+0 At5g22430 unknown protein C.G. S.X.
0.02 6e-1 34 Vitis vinifera 1618959_at CB977982 hypothetical protein LOC100247141 - 9e-1 At5g20020 RAN2 C.G. S.X.
0.09 2e-7 56 Zea mays Zm.3006.1.A1_a_at BG873873 - - 2e-2 At3g21352 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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