Gene omics information

Query gene ID	Contig4131_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig4131_at	Contig4131	-	-	2e-23	At1g77490	TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE)	S.X.	H.G.	Please select
0.50	66.9	Contig7152_at	Contig7152	-	-	2e-34	At3g58600	-	S.X.	H.G.	Please select
0.46	61.0	Contig22861_at	Contig22861	-	-	7e+0	At3g59880	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig2846_at	Contig2846	-	-	3e-5	At2g27285	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig16073_at	Contig16073	-	-	3e-2	At5g37200	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.42	55.2	Contig6905_s_at	Contig6905	-	-	2e+0	At4g19620	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.4	99.7	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
16.7	99.6	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
15.3	99.6	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
14.0	99.5	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
13.1	99.4	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
11.4	99.3	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
11.3	99.3	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
11.2	99.2	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
10.4	99.2	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.9	99.1	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	2e-147	521	Contig4135_at	Contig4135	-	-	2e-7	At4g08390	SAPX (STROMAL ASCORBATE PEROXIDASE)	C.G.	S.X.	Please select
0.30	9e-45	180	Contig4292_at	Contig4292	-	-	9e-22	At1g77490	TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE)	C.G.	S.X.	Please select
0.01	2e-2	40	Contig20118_at	Contig20118	-	-	8e-22	At5g17460	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	36	Contig9903_at	Contig9903	-	-	1e-2	At3g20500	PAP18 (PURPLE ACID PHOSPHATASE 18)	C.G.	S.X.	Please select
0.01	3e-1	36	Contig1406_at	Contig1406	-	-	1e-2	At2g32290	BAM6 (BETA-AMYLASE 6)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig7556_s_at	Contig7556	-	-	5e-1	At1g21326	VQ motif-containing protein	C.G.	S.X.	Please select
0.02	1e+0	34	HS09F12u_s_at	HS09F12u	-	-	7e-1	At2g33780	VQ motif-containing protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig22553_at	Contig22553	-	-	1e-3	At3g52910	AtGRF4 (GROWTH-REGULATING FACTOR 4)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig16102_at	Contig16102	-	-	2e-13	At4g19540	INDL (IND1(IRON-SULFUR PROTEIN REQUIRED FOR NADH DEHYDROGENASE)-LIKE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	2e-23	111	Arabidopsis thaliana	At1g77490	844085	TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE)	Encodes a chloroplastic thylakoid ascorbate peroxidase tAPX. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.29	6e-33	143	Glycine max	Gma.10720.2.S1_a_at	AW396215	-	-	6e-76	At4g08390	SAPX (STROMAL ASCORBATE PEROXIDASE)	C.G.	S.X.	Please select
0.52	0	985	Oryza sativa	Os04g0434800	AB114855.1	-	Stromal ascorbate peroxidase	9e-19	At1g77490	TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.27	1e-27	125	Populus trichocarpa	Ptp.280.1.A1_at	BP930644	hypothetical protein	-	1e-81	At4g08390	SAPX (STROMAL ASCORBATE PEROXIDASE)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.78	0	1782	Triticum aestivum	Ta.19870.1.S1_a_at	BQ482857	-	-	1e-18	At4g08390	SAPX (STROMAL ASCORBATE PEROXIDASE)	C.G.	S.X.	Please select
0.32	2e-17	89	Vitis vinifera	1621336_at	CD798795	hypothetical protein LOC100254009	-	1e-84	At4g08390	SAPX (STROMAL ASCORBATE PEROXIDASE)	C.G.	S.X.	Please select
0.50	0	975	Zea mays	Zm.5762.1.A1_at	AI649475	hypothetical protein LOC100194161	-	9e-53	At1g77490	TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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