CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig4115_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 84.7 Contig4115_at Contig4115 - - 2e+0 At2g36895 unknown protein S.X. H.G.
0.77 90.8 rbaal21j20_s_at rbaal21j20 - - 8e+0 At3g43432 unknown protein S.X. H.G.
0.67 84.7 bah24p14_at bah24p14 - - 8e-2 At4g09170 unknown protein S.X. H.G.
0.67 84.7 Contig4113_at Contig4113 - - 2e+0 At4g29190 zinc finger (CCCH-type) family protein S.X. H.G.
0.40 53.1 Contig17628_at Contig17628 - - 8e-1 At1g05960 binding S.X. H.G.
0.14 12.9 Contig9101_s_at Contig9101 - - 7e+0 At5g23930 mitochondrial transcription termination factor-related / mTERF-related S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.5 99.6 GSM146357 Golden Promise Root Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.3 99.1 GSM146363 Maythorpe Root Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.6 99.0 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
8.2 98.7 GSM146373 Golden Promise shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.0 98.7 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.5 98.6 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
6.8 98.3 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.8 98.3 GSM71153 Barke stress and unstress replicate 4 GSE3170 Barley single feature polymorphisms and drought stress gene expression
6.3 98.1 GSM146358 Golden Promise Root Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.0 97.9 GSM282039 Malting_day4_Morex_rep2 GSE11200 Expression data from malting barley seeds
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.95 0 1978 Contig4115_s_at Contig4115 - - 2e+0 At2g36895 unknown protein C.G. S.X.
0.27 8e-88 323 EBro08_SQ003_I19_s_at EBro08_SQ003_I19 - - 6e+0 At5g09960 unknown protein C.G. S.X.
0.39 7e-70 264 Contig4113_at Contig4113 - - 2e+0 At4g29190 zinc finger (CCCH-type) family protein C.G. S.X.
0.32 6e-61 234 Contig4111_at Contig4111 - - 6e-1 At1g49010 myb family transcription factor C.G. S.X.
0.42 1e-43 176 AJ311603_at AJ311603 - - 2e+0 At4g17470 palmitoyl protein thioesterase family protein C.G. S.X.
0.17 5e-43 174 Contig16476_at Contig16476 - - 2e+0 At2g04395 DNA binding C.G. S.X.
0.20 3e-7 56 Contig4112_at Contig4112 - - 6e-1 At2g30560 glycine-rich protein C.G. S.X.
0.07 5e-6 52 Contig8356_s_at Contig8356 - - 8e-10 At1g11190 BFN1 (BIFUNCTIONAL NUCLEASE I) C.G. S.X.
0.02 7e-2 38 AF474373_CDS-2_at AF474373_CDS-2 - - 3e-1 At1g52905 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At2g36895 818263 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P - - - C.G. S.X.
0.02 2e-1 38 Glycine max PsAffx.C210000011_at PsAffx.C210000011 - - 3e+0 At5g03750 - C.G. S.X.
0.48 2e-48 194 Oryza sativa Os04g0652700 AK106059.1 - Nuclease I 6e-1 At2g37000 TCP family transcription factor, putative C.G. S.X.
0.02 3e+0 34 Populus trichocarpa PtpAffx.220413.1.S1_at pmrna36798 - - 1e-1 At1g14300 binding C.G. S.X.
0.32 2e-59 230 Triticum aestivum TaAffx.128682.1.S1_at CA652635 - - 2e+0 At4g29190 zinc finger (CCCH-type) family protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1608591_at BQ793022 hypothetical protein LOC100245866 - 2e-8 At3g06980 DEAD/DEAH box helicase, putative C.G. S.X.
0.20 6e-27 121 Zea mays Zm.12163.1.A1_at AY108503.1 - - 2e-2 At5g59500 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage