Gene omics information

Query gene ID	Contig4107_x_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	80.3	Contig4107_x_at	Contig4107	-	-	2e-1	At1g14450	unknown protein	S.X.	H.G.	Please select
0.42	55.2	HVSMEl0006H21r2_at	HVSMEl0006H21r2	-	-	8e+0	At4g32175	RNA binding	S.X.	H.G.	Please select
0.28	35.5	Contig19280_at	Contig19280	-	-	5e+0	At1g16240	SYP51 (SYNTAXIN OF PLANTS 51)	S.X.	H.G.	Please select
0.27	32.1	Contig4051_s_at	Contig4051	-	-	2e+0	At5g58575	-	S.X.	H.G.	Please select
0.25	28.9	Contig20761_at	Contig20761	-	-	7e-2	At1g09176	unknown protein	S.X.	H.G.	Please select
0.19	19.6	Contig12264_s_at	Contig12264	-	-	2e-8	At3g59890	dihydrodipicolinate reductase family protein	S.X.	H.G.	Please select
0.13	11.6	Contig20231_at	Contig20231	-	-	1e-1	At1g72690	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.8	99.4	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
11.9	99.3	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.6	99.2	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.9	98.9	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.9	98.9	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.2	98.7	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.1	98.7	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.3	98.5	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
6.5	98.2	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.92	0	761	Contig4107_s_at	Contig4107	-	-	2e-1	At1g14450	unknown protein	C.G.	S.X.	Please select
0.87	0	682	Contig4108_x_at	Contig4108	-	-	2e-1	At1g14450	unknown protein	C.G.	S.X.	Please select
0.47	3e-94	343	HC107F06_SK_x_at	HC107F06_SK	-	-	8e-1	At5g45620	26S proteasome regulatory subunit, putative (RPN9)	C.G.	S.X.	Please select
0.41	3e-94	343	Contig4106_at	Contig4106	-	-	4e+0	At2g42760	unknown protein	C.G.	S.X.	Please select
0.53	3e-91	333	HV_CEb0012G15r2_at	HV_CEb0012G15r2	-	-	8e+0	At4g26880	stigma-specific Stig1 family protein	C.G.	S.X.	Please select
0.38	1e-56	218	HT05G18u_at	HT05G18u	-	-	4e+0	At1g47271	-	C.G.	S.X.	Please select
0.12	7e-9	59	HVSMEl0009A17f2_x_at	HVSMEl0009A17f2	-	-	9e+0	At5g60430	antiporter/ drug transporter	C.G.	S.X.	Please select
0.03	1e-1	36	Contig1162_at	Contig1162	-	-	4e-13	At1g07790	HTB1	C.G.	S.X.	Please select
0.04	1e-1	36	Contig5064_s_at	Contig5064	-	-	1e-3	At2g20490	NOP10	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	2e-1	36	Arabidopsis thaliana	At1g14450	838007	unknown protein	F:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;PF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	1e-9	63	Glycine max	Gma.2987.1.S1_s_at	CD393690	-	-	2e-4	At2g02510	unknown protein	C.G.	S.X.	Please select
0.34	2e-67	256	Oryza sativa	Os02g0564200	AK059007.1	-	-	1e+0	At3g33187	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	5e-3	42	Populus trichocarpa	Ptp.89.1.S1_s_at	CV236988	hypothetical protein	-	4e-1	At2g02510	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.77	2e-106	385	Triticum aestivum	Ta.9941.1.S1_at	CA704590	-	-	4e+0	At1g17330	metal-dependent phosphohydrolase HD domain-containing protein-related	C.G.	S.X.	Please select
0.11	3e-13	73	Vitis vinifera	1622491_at	CF516970	-	-	2e+0	At2g02510	unknown protein	C.G.	S.X.	Please select
0.35	9e-67	252	Zea mays	Zm.6475.1.A1_at	CK347790	hypothetical protein LOC100277255	-	5e+0	At5g57400	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage