Gene omics information

Query gene ID	Contig4072_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig4072_at	Contig4072	-	-	2e+0	At2g31610	40S ribosomal protein S3 (RPS3A)	S.X.	H.G.	Please select
0.73	88.7	Contig30_s_at	Contig30	-	-	4e-19	At5g59690	histone H4	S.X.	H.G.	Please select
0.67	84.7	Contig3558_s_at	Contig3558	-	-	2e-15	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	S.X.	H.G.	Please select
0.60	77.3	Contig21617_at	Contig21617	-	-	3e-1	At4g31470	pathogenesis-related protein, putative	S.X.	H.G.	Please select
0.55	72.0	HD13H12r_s_at	HD13H12r	-	-	2e-1	At3g28710	H+-transporting two-sector ATPase, putative	S.X.	H.G.	Please select
0.23	26.1	Contig3806_s_at	Contig3806	-	-	1e-3	At2g43710	SSI2	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
67.8	100.0	GSM71147	OWB-D unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
47.0	99.9	GSM71157	Steptoe stress and unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
35.3	99.9	GSM71145	OWB-D unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
28.9	99.9	GSM160464	drought control rep1	GSE6990	Barley drought stress
25.3	99.8	GSM71159	Steptoe stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
23.7	99.8	GSM71158	Steptoe stress and unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
22.6	99.8	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
19.7	99.7	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
13.2	99.4	GSM71146	OWB-D unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
9.7	99.0	GSM68891	3 h control replicate 3	GSE3097	Barley1 salinity stress study

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-6	54	Contig26537_at	Contig26537	-	-	8e+0	At5g47435	formyltetrahydrofolate deformylase, putative	C.G.	S.X.	Please select
0.03	4e-6	52	Contig4747_at	Contig4747	-	-	2e+0	At2g05620	PGR5 (proton gradient regulation 5)	C.G.	S.X.	Please select
0.03	4e-6	52	Contig8220_at	Contig8220	-	-	6e-1	At1g33040	NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5)	C.G.	S.X.	Please select
0.03	4e-6	52	Contig7910_at	Contig7910	-	-	2e+0	At3g25070	RIN4 (RPM1 INTERACTING PROTEIN 4)	C.G.	S.X.	Please select
0.02	2e-5	50	Contig12512_at	Contig12512	-	-	4e-20	At4g24160	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select
0.03	2e-5	50	Contig3452_at	Contig3452	-	-	1e-1	At1g11700	unknown protein	C.G.	S.X.	Please select
0.03	2e-5	50	Contig12329_at	Contig12329	-	-	8e+0	At5g14010	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.02	2e-5	50	Contig11369_at	Contig11369	-	-	3e-12	At3g24550	ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1)	C.G.	S.X.	Please select
0.02	2e-5	50	Contig9573_at	Contig9573	-	-	4e-9	At1g43190	polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At2g31610	817719	40S ribosomal protein S3 (RPS3A)	F:structural constituent of ribosome;P:response to salt stress, translation, response to abiotic stimulus;C:in 6 components;BOMAPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e-2	42	Glycine max	Gma.3043.1.S1_at	CD415603	-	-	3e+0	At4g28170	unknown protein	C.G.	S.X.	Please select
0.31	1e-58	228	Oryza sativa	Os02g0230300	AK058752.1	-	En/Spm-like transposon protein (Protodermal factor1)	3e+0	At3g60010	ASK13 (ARABIDOPSIS SKP1-LIKE 13)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e-1	38	Populus trichocarpa	PtpAffx.1213.1.S1_a_at	CV244506	hypothetical protein	-	6e-1	At2g42840	PDF1 (PROTODERMAL FACTOR 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.76	0	860	Triticum aestivum	Ta.21394.1.S1_at	BJ215681	-	-	2e+0	At1g30016	unknown protein	C.G.	S.X.	Please select
0.04	2e-3	42	Vitis vinifera	1614133_at	CD711415	hypothetical protein LOC100255873	-	5e-2	At1g43800	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	C.G.	S.X.	Please select
0.06	3e-6	52	Zea mays	Zm.11602.1.A1_at	BM379241	-	-	6e+0	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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