CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig4070_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.72 87.4 Contig4070_s_at Contig4070 - - 4e-22 At5g65620 peptidase M3 family protein / thimet oligopeptidase family protein S.X. H.G.
0.70 86.0 Contig3243_x_at Contig3243 - - 6e-4 At1g44970 peroxidase, putative S.X. H.G.
0.65 81.4 Contig13430_s_at Contig13430 - - 6e-5 At5g21930 PAA2 (P-TYPE ATPASE OF ARABIDOPSIS 2) S.X. H.G.
0.63 80.3 Contig18185_at Contig18185 - - 5e+0 At2g30120 unknown protein S.X. H.G.
0.58 74.9 Contig16002_at Contig16002 - - 2e+0 At4g31800 WRKY18 S.X. H.G.
0.56 74.3 Contig23438_at Contig23438 - - 2e+0 At1g57860 60S ribosomal protein L21 S.X. H.G.
0.54 70.3 Contig14534_at Contig14534 - - 7e-1 At1g64930 CYP89A7 S.X. H.G.
0.52 68.3 Contig14535_at Contig14535 - - 5e-1 At1g08830 CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) S.X. H.G.
0.48 63.2 Contig3923_at Contig3923 - - 4e-1 At3g04460 PEX12 S.X. H.G.
0.47 62.2 Contig13661_at Contig13661 - - 2e+0 At2g32885 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.7 98.3 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.3 97.4 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.0 97.2 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.7 96.9 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9 95.8 GSM261044 before 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.7 95.5 GSM440960 Stressed lemma_Rep1 GSE17669 Gene expression in the barley spike during drought stress
3.6 95.3 GSM261040 Dicktoo-deacclimation-rep2 GSE10329 Low temperature stress in cv. Dicktoo
3.6 95.3 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.6 95.3 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.4 94.8 GSM146375 Maythorpe shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 6e-1 36 Contig6979_at Contig6979 - - 2e-7 At5g46860 VAM3 C.G. S.X.
0.01 6e-1 36 Contig16327_at Contig16327 - - 4e+0 At3g03341 unknown protein C.G. S.X.
0.01 6e-1 36 Contig13678_s_at Contig13678 - - 9e-6 At3g26744 ICE1 (INDUCER OF CBF EXPRESSION 1) C.G. S.X.
0.01 6e-1 36 Contig13678_at Contig13678 - - 9e-6 At3g26744 ICE1 (INDUCER OF CBF EXPRESSION 1) C.G. S.X.
0.01 6e-1 36 Contig9989_at Contig9989 - - 2e-1 At4g23710 VAG2 C.G. S.X.
0.01 2e+0 34 Contig11326_at Contig11326 - - 2e+0 At3g61210 embryo-abundant protein-related C.G. S.X.
0.01 2e+0 34 Contig7996_at Contig7996 - - 8e-10 At2g42750 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.01 2e+0 34 Contig6034_at Contig6034 - - 1e-3 At5g05140 transcription elongation factor-related C.G. S.X.
0.01 2e+0 34 Contig5705_at Contig5705 - - 4e-2 At5g06570 hydrolase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 4e-22 107 Arabidopsis thaliana At5g65620 836688 peptidase M3 family protein / thimet oligopeptidase family protein F:metalloendopeptidase activity;P:proteolysis;C:cytosol, chloroplast, chloroplast stroma;BOFMPA - - - C.G. S.X.
0.19 2e-28 129 Glycine max Gma.5903.2.S1_a_at AW433295 - - 8e-38 At5g10540 peptidase M3 family protein / thimet oligopeptidase family protein C.G. S.X.
0.73 0 1909 Oryza sativa Os02g0830100 AK065077.1 - Oligopeptidase A 7e-24 At5g65620 peptidase M3 family protein / thimet oligopeptidase family protein C.G. S.X.
0.27 4e-29 131 Populus trichocarpa Ptp.3296.1.S1_s_at CV255955 hypothetical protein - 1e-73 At5g65620 peptidase M3 family protein / thimet oligopeptidase family protein C.G. S.X.
0.28 0 652 Triticum aestivum Ta.2059.2.S1_a_at CD896628 - - 4e-22 At5g65620 peptidase M3 family protein / thimet oligopeptidase family protein C.G. S.X.
0.13 4e-16 85 Vitis vinifera 1615292_at CF214583 similar to oligopeptidase A - 1e-37 At5g10540 peptidase M3 family protein / thimet oligopeptidase family protein C.G. S.X.
0.52 0 1110 Zea mays Zm.3613.1.A1_at BG841007 hypothetical protein LOC100273532 - 4e-24 At5g10540 peptidase M3 family protein / thimet oligopeptidase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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