Gene omics information

Query gene ID	Contig4066_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	72.0	Contig4066_at	Contig4066	-	-	1e-4	At4g17670	senescence-associated protein-related	S.X.	H.G.	Please select
0.56	74.3	Contig6339_s_at	Contig6339	-	-	2e+0	At1g14450	unknown protein	S.X.	H.G.	Please select
0.53	69.7	HW01P03u_s_at	HW01P03u	-	-	8e+0	At5g35470	unknown protein	S.X.	H.G.	Please select
0.42	55.2	Contig3445_at	Contig3445	-	-	3e-3	At5g38470	DNA repair protein RAD23, putative	S.X.	H.G.	Please select
0.38	49.5	Contig5946_at	Contig5946	-	-	2e+0	At1g28330	DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)	S.X.	H.G.	Please select
0.35	45.1	EBpi07_SQ002_J15_at	EBpi07_SQ002_J15	-	-	5e+0	At2g03060	DNA binding / transcription factor	S.X.	H.G.	Please select
0.21	22.6	Contig12795_at	Contig12795	-	-	3e-4	At1g25375	metallo-beta-lactamase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
60.9	100.0	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
20.3	99.7	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
17.2	99.6	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
15.3	99.6	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
14.9	99.5	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
13.4	99.4	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
13.2	99.4	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
12.1	99.3	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
9.7	99.0	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
8.7	98.9	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	1e-79	295	Contig4063_at	Contig4063	-	-	2e-2	At4g17670	senescence-associated protein-related	C.G.	S.X.	Please select
0.24	1e-67	256	Contig4061_at	Contig4061	-	-	2e-2	At4g17670	senescence-associated protein-related	C.G.	S.X.	Please select
0.26	4e-58	224	Contig4062_at	Contig4062	-	-	3e-2	At4g17670	senescence-associated protein-related	C.G.	S.X.	Please select
0.17	4e-21	101	Contig7873_at	Contig7873	-	-	1e-1	At1g06850	AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52)	C.G.	S.X.	Please select
0.08	3e-18	91	Contig9941_at	Contig9941	-	-	2e-5	At4g17670	senescence-associated protein-related	C.G.	S.X.	Please select
0.06	3e-3	42	Contig9939_at	Contig9939	-	-	2e+0	At4g17670	senescence-associated protein-related	C.G.	S.X.	Please select
0.03	3e-3	42	Contig12757_at	Contig12757	-	-	4e-1	At5g50220	F-box family protein	C.G.	S.X.	Please select
0.06	4e-2	38	Contig6632_s_at	Contig6632	-	-	2e-3	At5g37200	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	4e-2	38	Contig7450_at	Contig7450	-	-	7e+0	At3g21055	PSBTN (photosystem II subunit T)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	1e-4	48	Arabidopsis thaliana	At4g17670	827487	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	9e-9	61	Glycine max	GmaAffx.66836.1.S1_at	AW756412	-	-	3e-14	At4g17670	senescence-associated protein-related	C.G.	S.X.	Please select
0.26	5e-48	192	Oryza sativa	OsAffx.4131.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	5e-4	46	Populus trichocarpa	PtpAffx.162338.1.S1_at	CN519765	hypothetical protein	-	3e-5	At5g47060	senescence-associated protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.59	5e-90	331	Triticum aestivum	Ta.22893.1.S1_at	CA650284	-	-	9e-5	At4g17670	senescence-associated protein-related	C.G.	S.X.	Please select
0.07	1e-4	46	Vitis vinifera	1620816_at	BQ800154	hypothetical protein LOC100264994	-	1e-3	At2g44670	senescence-associated protein-related	C.G.	S.X.	Please select
0.19	5e-23	107	Zea mays	Zm.7612.1.A1_at	BM079194	hypothetical protein LOC100274866	-	7e-3	At4g17670	senescence-associated protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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