CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig4008_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig4008_at Contig4008 - - 1e+0 At2g01930 BPC1 (BASIC PENTACYSTEINE1) S.X. H.G.
0.50 66.9 Contig6123_at Contig6123 - - 3e+0 At5g24105 AGP41 (ARABINOGALACTAN-PROTEIN 41) S.X. H.G.
0.44 58.9 Contig7766_at Contig7766 - - 1e-34 At5g55910 D6PK (D6 PROTEIN KINASE) S.X. H.G.
0.36 47.1 Contig9785_at Contig9785 - - 9e-4 At4g25620 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.23 26.1 Contig4737_s_at Contig4737 - - 3e-29 At2g35040 AICARFT/IMPCHase bienzyme family protein S.X. H.G.
0.20 21.1 Contig154_at Contig154 - - 4e-4 At4g27230 HTA2 (histone H2A) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
34.3 99.9 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
32.8 99.9 GSM282025 Control_dryseed_Morex_rep1 GSE11200 Expression data from malting barley seeds
32.6 99.9 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
31.8 99.9 GSM282041 Control_dryseed_Morex_rep2 GSE11200 Expression data from malting barley seeds
28.9 99.9 GSM238421 Endosperm 0 h; Seed germination Rep 2 GSE9365 Expression data from barley maturing and germinating grains
26.9 99.8 GSM238423 Endosperm 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
24.3 99.8 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
23.5 99.8 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
23.1 99.8 GSM238420 Endosperm 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
17.9 99.7 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 6e-4 44 HU14P01u_at HU14P01u - - 1e+0 At2g23430 ICK1 C.G. S.X.
0.03 6e-4 44 Contig842_x_at Contig842 - - 3e-8 At1g67090 RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) C.G. S.X.
0.03 2e-3 42 Contig8956_at Contig8956 - - 7e-3 At1g64900 CYP89A2 (CYTOCHROME P450 89A2) C.G. S.X.
0.02 2e-3 42 Contig15384_at Contig15384 - - 1e-11 At5g55580 mitochondrial transcription termination factor family protein / mTERF family protein C.G. S.X.
0.04 2e-3 42 Contig13088_at Contig13088 - - 3e+0 At4g12440 adenine phosphoribosyltransferase, putative C.G. S.X.
0.04 2e-3 42 Contig12332_at Contig12332 - - 4e+0 At3g50410 OBP1 (OBF BINDING PROTEIN 1) C.G. S.X.
0.02 9e-3 40 Contig8142_at Contig8142 - - 8e-26 At1g12640 membrane bound O-acyl transferase (MBOAT) family protein C.G. S.X.
0.03 9e-3 40 Contig4545_s_at Contig4545 - - 2e+0 At5g02020 unknown protein C.G. S.X.
0.02 4e-2 38 Contig21274_at Contig21274 - - 3e-9 At5g07180 ERL2 (ERECTA-LIKE 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 34 Arabidopsis thaliana At2g01930 814724 BPC1 (BASIC PENTACYSTEINE1) BASIC PENTACYSTEINE1 (BPC1) is a regulator of the homeotic Arabidopsis thaliana gene SEEDSTICK (STK), which controls ovule identity. BPC1 induces conformational changes by cooperative binding to purine-rich elements present in the STK regulatory sequence. STK is upregulated in bpc1 mutant. - - - C.G. S.X.
0.04 2e-3 44 Glycine max GmaAffx.12286.2.S1_at BM108265 - - 1e-11 At5g38510 rhomboid family protein C.G. S.X.
0.20 7e-16 85 Oryza sativa Os08g0104400 AK064224.1 - Conserved hypothetical protein 2e-2 At3g12960 unknown protein C.G. S.X.
0.04 6e+0 32 Populus trichocarpa PtpAffx.77780.1.A1_at CK094923 - - 2e+0 At5g65410 HB25 (HOMEOBOX PROTEIN 25) C.G. S.X.
0.66 3e-146 517 Triticum aestivum Ta.13739.1.S1_at CD910658 - - 1e+0 At3g52520 unknown protein C.G. S.X.
0.04 4e-4 44 Vitis vinifera 1614133_at CD711415 hypothetical protein LOC100255873 - 5e-2 At1g43800 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative C.G. S.X.
0.04 5e-4 44 Zea mays Zm.6913.2.A1_a_at AI065646 - - 9e-1 At2g16060 AHB1 (ARABIDOPSIS HEMOGLOBIN 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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