Gene omics information

Query gene ID Contig4008_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9198.1Contig4008_atContig4008--1e+0At2g01930BPC1 (BASIC PENTACYSTEINE1)S.X.H.G.
0.5066.9Contig6123_atContig6123--3e+0At5g24105AGP41 (ARABINOGALACTAN-PROTEIN 41)S.X.H.G.
0.4458.9Contig7766_atContig7766--1e-34At5g55910D6PK (D6 PROTEIN KINASE)S.X.H.G.
0.3647.1Contig9785_atContig9785--9e-4At4g25620hydroxyproline-rich glycoprotein family proteinS.X.H.G.
0.2326.1Contig4737_s_atContig4737--3e-29At2g35040AICARFT/IMPCHase bienzyme family proteinS.X.H.G.
0.2021.1Contig154_atContig154--4e-4At4g27230HTA2 (histone H2A)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
34.399.9GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grains
32.899.9GSM282025Control_dryseed_Morex_rep1GSE11200Expression data from malting barley seeds
32.699.9GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
31.899.9GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seeds
28.999.9GSM238421Endosperm 0 h; Seed germination Rep 2GSE9365Expression data from barley maturing and germinating grains
26.999.8GSM238423Endosperm 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grains
24.399.8GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grains
23.599.8GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
23.199.8GSM238420Endosperm 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grains
17.999.7GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seeds
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.046e-444HU14P01u_atHU14P01u--1e+0At2g23430ICK1C.G.S.X.
0.036e-444Contig842_x_atContig842--3e-8At1g67090RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)C.G.S.X.
0.032e-342Contig8956_atContig8956--7e-3At1g64900CYP89A2 (CYTOCHROME P450 89A2)C.G.S.X.
0.022e-342Contig15384_atContig15384--1e-11At5g55580mitochondrial transcription termination factor family protein / mTERF family proteinC.G.S.X.
0.042e-342Contig13088_atContig13088--3e+0At4g12440adenine phosphoribosyltransferase, putativeC.G.S.X.
0.042e-342Contig12332_atContig12332--4e+0At3g50410OBP1 (OBF BINDING PROTEIN 1)C.G.S.X.
0.029e-340Contig8142_atContig8142--8e-26At1g12640membrane bound O-acyl transferase (MBOAT) family proteinC.G.S.X.
0.039e-340Contig4545_s_atContig4545--2e+0At5g02020unknown proteinC.G.S.X.
0.024e-238Contig21274_atContig21274--3e-9At5g07180ERL2 (ERECTA-LIKE 2)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+034Arabidopsis thalianaAt2g01930814724BPC1 (BASIC PENTACYSTEINE1)BASIC PENTACYSTEINE1 (BPC1) is a regulator of the homeotic Arabidopsis thaliana gene SEEDSTICK (STK), which controls ovule identity. BPC1 induces conformational changes by cooperative binding to purine-rich elements present in the STK regulatory sequence. STK is upregulated in bpc1 mutant.---C.G.S.X.
0.042e-344Glycine maxGmaAffx.12286.2.S1_atBM108265--1e-11At5g38510rhomboid family proteinC.G.S.X.
0.207e-1685Oryza sativaOs08g0104400AK064224.1-Conserved hypothetical protein2e-2At3g12960unknown proteinC.G.S.X.
0.046e+032Populus trichocarpaPtpAffx.77780.1.A1_atCK094923--2e+0At5g65410HB25 (HOMEOBOX PROTEIN 25)C.G.S.X.
0.663e-146517Triticum aestivumTa.13739.1.S1_atCD910658--1e+0At3g52520unknown proteinC.G.S.X.
0.044e-444Vitis vinifera1614133_atCD711415hypothetical protein LOC100255873-5e-2At1g43800acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putativeC.G.S.X.
0.045e-444Zea maysZm.6913.2.A1_a_atAI065646--9e-1At2g16060AHB1 (ARABIDOPSIS HEMOGLOBIN 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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