CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig3992_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.70 86.0 Contig3992_at Contig3992 - - 1e-40 At1g14670 endomembrane protein 70, putative S.X. H.G.
0.93 98.7 Contig5182_at Contig5182 - - 9e-34 At4g12590 unknown protein S.X. H.G.
0.86 94.8 Contig3018_at Contig3018 - - 2e+0 At4g14630 GLP9 (GERMIN-LIKE PROTEIN 9) S.X. H.G.
0.82 93.1 Contig7652_at Contig7652 - - 3e-3 At3g56660 BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49) S.X. H.G.
0.67 84.7 Contig5492_at Contig5492 - - 1e-7 At3g44890 RPL9 (RIBOSOMAL PROTEIN L9) S.X. H.G.
0.67 84.7 Contig5260_s_at Contig5260 - - 0 At2g29630 THIC (ThiaminC) S.X. H.G.
0.64 80.9 Contig18164_at Contig18164 - - 1e-11 At1g20920 DEAD box RNA helicase, putative S.X. H.G.
0.64 80.9 Contig20916_at Contig20916 - - 3e-1 At5g66160 JR700 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.2 98.5 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
6.4 98.1 GSM215727 Control (DMSO) treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
6.3 98.1 GSM215728 gibberellin treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
6.0 97.9 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.3 96.4 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.9 95.8 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.7 95.5 GSM215731 gibberellin treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
3.5 95.1 GSM382233 Root_Hg2 GSE15295 Mercury toxicity in barley roots
3.5 95.1 GSM282026 Malting_day1_Legacy_rep4 GSE11200 Expression data from malting barley seeds
3.5 95.1 GSM382232 Root_Hg1 GSE15295 Mercury toxicity in barley roots
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 7e-13 75 Contig15504_at Contig15504 - - 2e-14 At1g14670 endomembrane protein 70, putative C.G. S.X.
0.01 9e-3 42 Contig6897_at Contig6897 carboxypeptidase I precursor - 6e-5 At4g12910 scpl20 (serine carboxypeptidase-like 20) C.G. S.X.
0.01 4e-2 40 Contig13555_at Contig13555 - - 4e-1 Atmg01290 - C.G. S.X.
0.03 4e-2 40 Contig4672_at Contig4672 - - 4e-71 At5g10840 endomembrane protein 70, putative C.G. S.X.
0.01 1e-1 38 Contig14464_at Contig14464 - - 5e+0 At1g09176 unknown protein C.G. S.X.
0.01 1e-1 38 Contig7791_at Contig7791 - - 9e-23 At2g01270 AtQSOX2 (quiescin-sulfhydryl oxidase 2) C.G. S.X.
0.01 1e-1 38 Contig5446_s_at Contig5446 - - 1e+0 At3g46070 zinc finger (C2H2 type) family protein C.G. S.X.
0.01 6e-1 36 Contig9708_at Contig9708 - - 2e-1 At4g13100 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 6e-1 36 Contig9114_at Contig9114 - - 5e+0 At2g38730 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.40 1e-40 169 Arabidopsis thaliana At1g14670 838029 endomembrane protein 70, putative F:unknown;P:transport;C:integral to membrane, Golgi apparatus, membrane;MPOF - - - C.G. S.X.
0.28 1e-75 286 Glycine max GmaAffx.91748.1.S1_s_at CF807473 - - 1e-102 At2g01970 endomembrane protein 70, putative C.G. S.X.
0.73 0 2034 Oryza sativa Os03g0237000 AK064791.1 - Nonaspanin (TM9SF) family protein 3e-47 At1g14670 endomembrane protein 70, putative C.G. S.X.
0.29 6e-65 250 Populus trichocarpa Ptp.1915.1.S1_at AF187853.1 hypothetical protein - 4e-101 At5g37310 - C.G. S.X.
0.87 0 3348 Triticum aestivum Ta.21364.1.S1_s_at BJ265438 - - 4e-28 At1g14670 endomembrane protein 70, putative C.G. S.X.
0.10 5e-25 115 Vitis vinifera 1614620_at CF404986 hypothetical protein LOC100249044 - 5e-37 At5g37310 - C.G. S.X.
0.71 0 789 Zea mays Zm.17591.1.A1_a_at AW288561 transmembrane 9 superfamily protein member 1 /// transmembrane 9 superfamily protein member 1 - 3e-44 At2g01970 endomembrane protein 70, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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