Gene omics information

Query gene ID	Contig397_x_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	78.7	Contig397_x_at	Contig397	-	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	S.X.	H.G.	Please select
0.50	66.9	Contig11224_at	Contig11224	-	-	1e+1	At5g59720	HSP18.2 (heat shock protein 18.2)	S.X.	H.G.	Please select
0.38	49.5	Contig11162_at	Contig11162	-	-	3e-26	At1g60490	ATVPS34	S.X.	H.G.	Please select
0.31	38.6	Contig11659_at	Contig11659	-	-	5e-2	At5g32440	-	S.X.	H.G.	Please select
0.29	35.5	Contig1748_s_at	Contig1748	-	-	6e+0	At2g35605	SWIB complex BAF60b domain-containing protein	S.X.	H.G.	Please select
0.21	22.6	Contig11107_at	Contig11107	-	-	7e-4	At2g45140	PVA12 (PLANT VAP HOMOLOG 12)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.2	94.3	GSM372980	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.2	94.3	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.1	94.1	GSM372986	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.1	94.1	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.0	93.8	GSM372977	genotype: 11542 - pathogen isolates: 5874 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.9	93.4	GSM373002	genotype: 11542 - pathogen isolates: K1 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.8	93.1	GSM373005	genotype: 11542 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.7	92.7	GSM372989	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.7	92.7	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.7	92.7	GSM372996	genotype: 11542 - pathogen isolates: K1 - time: 8 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.74	0	2436	Contig24_at	Contig24	-	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.72	0	2181	Contig668_at	Contig668	-	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.79	0	2145	Contig887_s_at	Contig887	-	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.76	0	1852	Contig459_s_at	Contig459	-	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.74	0	1836	Contig929_s_at	Contig929	-	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.50	0	801	Contig995_at	Contig995	-	-	4e-140	At1g07920	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.38	0	698	Contig679_s_at	Contig679	-	-	4e-78	At1g07920	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.25	7e-160	563	Contig576_x_at	Contig576	-	-	2e-21	At5g59690	histone H4	C.G.	S.X.	Please select
0.25	7e-160	563	Contig576_s_at	Contig576	-	-	2e-21	At5g59690	histone H4	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.79	0	1336	Arabidopsis thaliana	At1g07920	837307	elongation factor 1-alpha / EF-1-alpha	F:calmodulin binding, translation elongation factor activity;P:response to cadmium ion;C:mitochondrion, nucleolus, plasma membrane, chloroplast, membrane;BMOFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.69	0	1189	Glycine max	Gma.17616.1.S1_at	AW568275	-	-	0	At5g60390	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.72	0	1604	Oryza sativa	Os03g0177400	AK103738.1	-	EF-1 alpha	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.64	0	890	Populus trichocarpa	PtpAffx.291.1.A1_x_at	CV271058	hypothetical protein	-	0	At1g07940	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.84	0	2444	Triticum aestivum	Ta.659.4.S1_a_at	CD878208	-	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.66	0	1328	Vitis vinifera	1618385_at	CF518525	hypothetical protein LOC100246711	-	0	At1g07940	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.76	0	1495	Zea mays	Zm.3892.3.A1_at	AF136829.1	elongation factor 1 alpha	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage