Gene omics information

Query gene ID	Contig396_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig396_at	Contig396	-	-	3e-57	At5g09510	40S ribosomal protein S15 (RPS15D)	S.X.	H.G.	Please select
0.67	84.7	Contig3802_at	Contig3802	-	-	3e-76	At5g11770	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	S.X.	H.G.	Please select
0.44	58.9	HV_CEa0004J13r2_at	HV_CEa0004J13r2	-	-	3e+0	At5g62140	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig3173_at	Contig3173	-	-	6e+0	At4g05091	unknown protein	S.X.	H.G.	Please select
0.38	49.5	Contig3801_at	Contig3801	-	-	4e-26	At1g69840	band 7 family protein	S.X.	H.G.	Please select
0.28	35.5	HV12C23u_x_at	HV12C23u	-	-	5e+0	At5g35475	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.8	97.8	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
5.6	97.7	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
5.4	97.5	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.9	97.1	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
4.0	96.0	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.9	95.8	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.8	95.7	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
3.7	95.5	GSM146378	Maythorpe shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.5	95.1	GSM146370	Golden Promise shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.5	95.1	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.83	0	710	Contig373_at	Contig373	-	-	7e-52	At5g09510	40S ribosomal protein S15 (RPS15D)	C.G.	S.X.	Please select
0.83	0	710	Contig373_s_at	Contig373	-	-	7e-52	At5g09510	40S ribosomal protein S15 (RPS15D)	C.G.	S.X.	Please select
0.48	1e-101	369	Contig134_s_at	Contig134	-	-	2e-33	At1g04270	RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15)	C.G.	S.X.	Please select
0.44	2e-78	291	HV_CEa0012L06r2_x_at	HV_CEa0012L06r2	-	-	3e-14	At5g09510	40S ribosomal protein S15 (RPS15D)	C.G.	S.X.	Please select
0.21	2e-13	75	HC112G04_T3_at	HC112G04_T3	-	-	1e-30	At1g04270	RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15)	C.G.	S.X.	Please select
0.05	8e-13	73	Contig23027_at	Contig23027	-	-	1e-1	At3g26790	FUS3 (FUSCA 3)	C.G.	S.X.	Please select
0.01	7e-1	34	Contig10669_at	Contig10669	-	-	4e-9	At1g72330	ALAAT2 (ALANINE AMINOTRANSFERASE 2)	C.G.	S.X.	Please select
0.01	7e-1	34	Contig5405_at	Contig5405	-	-	1e-37	At3g26670	-	C.G.	S.X.	Please select
0.03	3e+0	32	HVSMEc0004G11r2_s_at	HVSMEc0004G11r2	-	-	1e+1	At5g52960	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.43	3e-57	222	Arabidopsis thaliana	At5g09510	830810	40S ribosomal protein S15 (RPS15D)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, plasma membrane;BOPMAF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.48	4e-51	202	Glycine max	GmaAffx.91708.1.S1_at	CF807433	-	-	6e-52	At5g09510	40S ribosomal protein S15 (RPS15D)	C.G.	S.X.	Please select
0.56	6e-162	571	Oryza sativa	Os07g0184300	CB966587	-	40S ribosomal protein S15 (Fragment)	2e-61	At5g09510	40S ribosomal protein S15 (RPS15D)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.40	3e-73	276	Populus trichocarpa	Ptp.1573.1.S1_at	CV267520	hypothetical protein	-	7e-83	At5g09510	40S ribosomal protein S15 (RPS15D)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.68	0	900	Triticum aestivum	Ta.23479.1.S1_a_at	CK160622	-	-	1e-47	At5g09510	40S ribosomal protein S15 (RPS15D)	C.G.	S.X.	Please select
0.42	7e-43	173	Vitis vinifera	1616502_at	CB969264	-	-	9e-67	At5g09510	40S ribosomal protein S15 (RPS15D)	C.G.	S.X.	Please select
0.46	2e-143	508	Zea mays	Zm.6569.1.A1_x_at	BG837146	hypothetical protein LOC100216869 /// 40S ribosomal protein S15	-	5e-32	At5g09510	40S ribosomal protein S15 (RPS15D)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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