Gene omics information

Query gene ID	Contig3961_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig3961_at	Contig3961	-	-	1e+0	At3g29560	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig3668_at	Contig3668	-	-	5e-1	At5g02030	RPL (REPLUMLESS)	S.X.	H.G.	Please select
0.60	77.3	Contig6213_at	Contig6213	-	-	8e-4	At1g05850	POM1 (POM-POM1)	S.X.	H.G.	Please select
0.55	72.0	Contig2986_at	Contig2986	-	-	1e-39	At3g28710	H+-transporting two-sector ATPase, putative	S.X.	H.G.	Please select
0.50	66.9	Contig4563_at	Contig4563	-	-	5e-15	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	S.X.	H.G.	Please select
0.50	66.9	Contig3118_at	Contig3118	-	-	3e-68	At3g27240	cytochrome c1, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.4	98.5	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.5	97.6	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.3	97.4	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
4.9	97.1	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.3	96.4	GSM282023	Malting_day4_Merit_rep3	GSE11200	Expression data from malting barley seeds
3.7	95.5	GSM282020	Malting_day4_Legacy_rep 3	GSE11200	Expression data from malting barley seeds
3.7	95.5	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM282027	Malting_day1_Legacy_rep2	GSE11200	Expression data from malting barley seeds
3.2	94.3	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	0	866	Contig3963_s_at	Contig3963	-	-	7e-39	At4g19210	ATRLI2	C.G.	S.X.	Please select
0.30	0	866	Contig3963_at	Contig3963	-	-	7e-39	At4g19210	ATRLI2	C.G.	S.X.	Please select
0.73	1e-143	508	HT09K07u_at	HT09K07u	-	-	1e+0	At3g29560	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Contig2519_x_at	Contig2519	-	-	9e-9	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.02	6e-1	34	Contig2517_s_at	Contig2517	-	-	2e-6	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.04	6e-1	34	EBed01_SQ002_N21_at	EBed01_SQ002_N21	-	-	1e+0	At2g15440	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Contig16591_at	Contig16591	-	-	1e+1	At4g05440	EDA35 (embryo sac development arrest 35)	C.G.	S.X.	Please select
0.02	6e-1	34	Contig6172_at	Contig6172	-	-	5e-17	At4g22330	ATCES1	C.G.	S.X.	Please select
0.04	3e+0	32	Contig20590_at	Contig20590	-	-	1e+0	At3g52520	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At3g29560	822616	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	8e-9	61	Glycine max	Gma.8114.1.S1_at	CD398562	-	-	4e-45	At4g19210	ATRLI2	C.G.	S.X.	Please select
0.10	3e-46	186	Oryza sativa	Os11g0546000	AK103366.1	-	RNase L inhibitor-like protein	4e-53	At4g19210	ATRLI2	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	2e+0	34	Populus trichocarpa	Ptp.2711.1.S1_at	CV231453	hypothetical protein	-	5e-60	At4g19210	ATRLI2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.25	1e-40	167	Triticum aestivum	Ta.20642.1.S1_at	CD491162	-	-	2e-5	At4g19210	ATRLI2	C.G.	S.X.	Please select
0.04	6e+0	30	Vitis vinifera	1619130_x_at	AY427145.1	-	-	4e+0	At3g28170	unknown protein	C.G.	S.X.	Please select
0.10	6e-41	167	Zea mays	Zm.2754.1.A1_at	AY104118.1	-	-	4e-53	At4g19210	ATRLI2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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