Gene omics information

Query gene ID	Contig394_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig394_at	Contig394	-	-	1e+0	At5g42850	-	S.X.	H.G.	Please select
0.83	94.0	Contig8819_s_at	Contig8819	-	-	2e+0	At4g19270	unknown protein	S.X.	H.G.	Please select
0.83	94.0	HVSMEk0006G04r2_at	HVSMEk0006G04r2	-	-	2e-1	At4g37790	HAT22	S.X.	H.G.	Please select
0.83	94.0	Contig8821_at	Contig8821	-	-	4e-9	At5g45190	cyclin family protein	S.X.	H.G.	Please select
0.83	94.0	EBan01_SQ005_B22_s_at	EBan01_SQ005_B22	-	-	5e+0	At1g30630	coatomer protein epsilon subunit family protein / COPE family protein	S.X.	H.G.	Please select
0.67	84.7	Contig20753_at	Contig20753	-	-	5e-7	At2g20900	diacylglycerol kinase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.1	99.5	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
12.6	99.4	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.8	98.6	GSM71143	OWB-R stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
7.6	98.6	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.2	98.5	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
6.0	97.9	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM282021	Malting_day4_Legacy_rep 2	GSE11200	Expression data from malting barley seeds
5.6	97.7	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.4	97.5	GSM282027	Malting_day1_Legacy_rep2	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	4e-27	121	Contig378_s_at	Contig378	-	-	2e+0	At2g31180	MYB14 (MYB DOMAIN PROTEIN 14)	C.G.	S.X.	Please select
0.03	9e-25	113	Contig711_s_at	Contig711	-	-	3e-2	At5g53590	auxin-responsive family protein	C.G.	S.X.	Please select
0.05	5e-8	57	Contig19196_at	Contig19196	-	-	1e+0	At3g01230	unknown protein	C.G.	S.X.	Please select
0.03	2e-7	56	Contig765_x_at	Contig765	-	-	2e+0	At1g79510	unknown protein	C.G.	S.X.	Please select
0.04	2e-7	56	HVSMEg0010D04f2_at	HVSMEg0010D04f2	-	-	1e+0	At5g41640	unknown protein	C.G.	S.X.	Please select
0.04	2e-7	56	Contig5609_at	Contig5609	-	-	5e+0	At2g01905	CYCJ18 (CYCLIN J18)	C.G.	S.X.	Please select
0.04	2e-7	56	Contig2585_s_at	Contig2585	-	-	5e-3	At5g13500	unknown protein	C.G.	S.X.	Please select
0.04	8e-7	54	HT11G14u_at	HT11G14u	-	-	1e+0	At2g43950	OEP37	C.G.	S.X.	Please select
0.04	8e-7	54	HB19F10r_at	HB19F10r	-	-	2e-29	At2g34420	LHB1B2	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e+0	34	Arabidopsis thaliana	At5g42850	834296	-	F:unknown;P:cell redox homeostasis;C:cellular_component unknown;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	2e-19	97	Glycine max	GmaAffx.89786.1.S1_at	CK605840	-	-	7e+0	At5g09711	unknown protein	C.G.	S.X.	Please select
0.44	1e-45	184	Oryza sativa	OsAffx.15537.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	1e-26	121	Populus trichocarpa	PtpAffx.249.846.A1_s_at	CV266302	hypothetical protein	-	1e+0	At2g31180	MYB14 (MYB DOMAIN PROTEIN 14)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.62	8e-175	613	Triticum aestivum	TaAffx.121102.3.S1_at	CA694399	-	-	1e+0	At4g28460	unknown protein	C.G.	S.X.	Please select
0.09	2e-24	111	Vitis vinifera	1615805_at	CD801749	-	-	1e+0	At2g31180	MYB14 (MYB DOMAIN PROTEIN 14)	C.G.	S.X.	Please select
0.38	2e-74	278	Zea mays	Zm.1089.1.A1_at	CF628396	hypothetical protein LOC100280051	-	7e+0	At5g42850	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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