Gene omics information

Query gene ID	Contig3932_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig3932_at	Contig3932	-	-	2e-3	At1g16230	syntaxin-related family protein	S.X.	H.G.	Please select
0.67	84.7	Contig7221_at	Contig7221	-	-	6e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.67	84.7	Contig721_s_at	Contig721	-	-	2e+0	At4g19095	unknown protein	S.X.	H.G.	Please select
0.55	72.0	HVSMEb0006M02r2_s_at	HVSMEb0006M02r2	-	-	6e-1	At3g22930	calmodulin, putative	S.X.	H.G.	Please select
0.34	43.6	Contig8565_at	Contig8565	-	-	7e-10	At3g13224	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.13	11.6	Contig177_at	Contig177	-	-	3e-93	At5g17310	UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.3	99.1	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
9.3	99.0	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
5.9	97.9	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.9	97.9	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
5.5	97.6	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.1	97.3	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
5.1	97.3	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
5.0	97.2	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.8	97.0	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.7	96.9	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.38	7e-82	303	Contig3933_at	Contig3933	-	-	6e-10	At1g79590	SYP52 (SYNTAXIN OF PLANTS 52)	C.G.	S.X.	Please select
0.01	3e-1	36	Contig13792_s_at	Contig13792	-	-	4e+0	At5g41614	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig15126_at	Contig15126	-	-	5e-2	At1g04590	-	C.G.	S.X.	Please select
0.01	1e+0	34	Contig14594_at	Contig14594	-	-	5e-17	At5g54080	HGO (HOMOGENTISATE 1,2-DIOXYGENASE)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig14040_at	Contig14040	-	-	1e+1	At5g38290	peptidyl-tRNA hydrolase family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig1385_at	Contig1385	-	-	5e-48	At1g65960	GAD2 (GLUTAMATE DECARBOXYLASE 2)	C.G.	S.X.	Please select
0.03	1e+0	34	Contig15766_at	Contig15766	-	-	1e-1	At1g15320	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig6757_at	Contig6757	-	-	3e-4	At1g72550	tRNA synthetase beta subunit family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig2622_at	Contig2622	-	-	4e-3	At1g18140	LAC1 (Laccase 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-3	44	Arabidopsis thaliana	At1g16230	838192	syntaxin-related family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	5e-8	59	Glycine max	GmaAffx.16533.1.S1_at	AW832630	-	-	6e-7	At1g16240	SYP51 (SYNTAXIN OF PLANTS 51)	C.G.	S.X.	Please select
0.56	2e-122	440	Oryza sativa	Os02g0119400	AK102774.1	-	Syntaxin 52 (AtSYP52)	4e-11	At1g79590	SYP52 (SYNTAXIN OF PLANTS 52)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	1e-14	81	Populus trichocarpa	PtpAffx.31126.1.A1_at	CV260708	hypothetical protein	-	2e-19	At1g79590	SYP52 (SYNTAXIN OF PLANTS 52)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.75	0	1209	Triticum aestivum	Ta.23381.1.S1_at	CK193086	-	-	6e-1	At1g16240	SYP51 (SYNTAXIN OF PLANTS 51)	C.G.	S.X.	Please select
0.08	6e-7	54	Vitis vinifera	1608830_at	CF403480	hypothetical protein LOC100250369	-	3e+0	At4g10450	60S ribosomal protein L9 (RPL90D)	C.G.	S.X.	Please select
0.32	3e-68	258	Zea mays	Zm.6216.1.S1_at	CO531189	hypothetical protein LOC100193337	-	2e-3	At1g79590	SYP52 (SYNTAXIN OF PLANTS 52)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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