Gene omics information

Query gene ID	Contig3920_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	88.7	Contig3920_at	Contig3920	-	-	3e-21	At5g01410	RSR4 (REDUCED SUGAR RESPONSE 4)	S.X.	H.G.	Please select
0.77	90.8	Contig3197_at	Contig3197	-	-	1e-50	At2g28190	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)	S.X.	H.G.	Please select
0.77	90.8	Contig6213_at	Contig6213	-	-	8e-4	At1g05850	POM1 (POM-POM1)	S.X.	H.G.	Please select
0.67	84.7	Contig3489_at	Contig3489	-	-	4e+0	At3g13882	structural constituent of ribosome	S.X.	H.G.	Please select
0.63	80.3	Contig3668_at	Contig3668	-	-	5e-1	At5g02030	RPL (REPLUMLESS)	S.X.	H.G.	Please select
0.63	80.3	Contig3961_at	Contig3961	-	-	1e+0	At3g29560	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig2828_at	Contig2828	-	-	2e-50	At5g63400	ADK1 (ADENYLATE KINASE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.0	99.3	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.2	99.1	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM282020	Malting_day4_Legacy_rep 3	GSE11200	Expression data from malting barley seeds
6.4	98.1	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
6.0	97.9	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.9	97.9	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.6	97.7	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.9	97.1	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.8	97.0	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.7	96.9	GSM282022	Malting_day4_Merit_rep4	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.58	0	960	Contig3919_at	Contig3919	-	-	3e-21	At5g01410	RSR4 (REDUCED SUGAR RESPONSE 4)	C.G.	S.X.	Please select
0.02	7e-2	38	Contig4677_at	Contig4677	-	-	8e-3	At1g65060	4CL3	C.G.	S.X.	Please select
0.01	3e-1	36	Contig5386_at	Contig5386	-	-	3e-3	At5g10730	binding / catalytic/ coenzyme binding	C.G.	S.X.	Please select
0.02	3e-1	36	Contig14289_at	Contig14289	-	-	2e+0	At4g16442	integral membrane family protein	C.G.	S.X.	Please select
0.01	3e-1	36	Contig7412_at	Contig7412	-	-	3e+0	At3g11640	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig3905_at	Contig3905	-	-	1e-1	At4g01150	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig7196_s_at	Contig7196	-	-	3e-6	At1g13820	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig8424_at	Contig8424	-	-	2e-3	At1g76220	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig7196_at	Contig7196	-	-	3e-6	At1g13820	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	3e-21	103	Arabidopsis thaliana	At5g01410	831738	RSR4 (REDUCED SUGAR RESPONSE 4)	Encodes a protein predicted to function in tandem with PDX2 to form glutamine amidotransferase complex with involved in vitamin B6 biosynthesis.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.48	0	728	Glycine max	Gma.4425.1.S1_a_at	BQ297572	pyridoxine biosynthesis protein	-	3e-19	At5g01410	RSR4 (REDUCED SUGAR RESPONSE 4)	C.G.	S.X.	Please select
0.64	0	1108	Oryza sativa	Os11g0708500	AK063409.1	-	Vitamin B6 biosynthesis protein family protein	3e-9	At5g01410	RSR4 (REDUCED SUGAR RESPONSE 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	1e-2	42	Populus trichocarpa	Ptp.6996.1.S1_at	BU863308	hypothetical protein	-	1e-51	At2g38230	ATPDX1.1 (pyridoxine biosynthesis 1.1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.84	0	1598	Triticum aestivum	Ta.5738.1.S1_at	BE492123	-	-	2e-13	At5g01410	RSR4 (REDUCED SUGAR RESPONSE 4)	C.G.	S.X.	Please select
0.30	5e-88	323	Vitis vinifera	1611124_at	CA818028	similar to Probable pyridoxal biosynthesis protein PDX1	-	5e-60	At5g01410	RSR4 (REDUCED SUGAR RESPONSE 4)	C.G.	S.X.	Please select
0.56	0	918	Zea mays	Zm.18420.1.S1_at	CA403504	hypothetical protein LOC100272732	-	8e-7	At5g01410	RSR4 (REDUCED SUGAR RESPONSE 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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