Gene omics information

Query gene ID	Contig3898_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig3898_at	Contig3898	-	-	1e-7	At3g13200	EMB2769 (EMBRYO DEFECTIVE 2769)	S.X.	H.G.	Please select
0.71	87.1	Contig22324_at	Contig22324	-	-	3e-1	At1g31812	ACBP6 (acyl-CoA-binding protein 6)	S.X.	H.G.	Please select
0.60	77.3	Contig17737_at	Contig17737	-	-	2e+0	At3g51636	unknown protein	S.X.	H.G.	Please select
0.55	72.0	Contig15658_at	Contig15658	-	-	1e+0	At2g22860	ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR)	S.X.	H.G.	Please select
0.44	58.9	rbah55a21_s_at	rbah55a21	-	-	4e+0	At5g26840	unknown protein	S.X.	H.G.	Please select
0.15	14.1	Contig21217_at	Contig21217	-	-	2e+0	At5g64810	WRKY51	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.1	98.7	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.1	98.7	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.3	98.1	GSM261065	Xantha s-46 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.1	98.0	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.9	97.9	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.6	97.7	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.3	97.4	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.0	97.2	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.0	97.2	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8	97.0	GSM261075	Albina e-16 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.80	0	1310	Contig3899_at	Contig3899	-	-	6e-10	At3g13200	EMB2769 (EMBRYO DEFECTIVE 2769)	C.G.	S.X.	Please select
0.18	7e-60	230	Contig12988_at	Contig12988	-	-	5e-1	At5g55970	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.17	1e-33	143	Contig12989_x_at	Contig12989	-	-	5e-1	At5g55970	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.17	1e-33	143	Contig12989_at	Contig12989	-	-	5e-1	At5g55970	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.04	4e-6	52	Contig20760_at	Contig20760	-	-	4e-1	At5g57887	unknown protein	C.G.	S.X.	Please select
0.03	6e-5	48	Contig13214_at	Contig13214	-	-	1e-1	At3g07260	forkhead-associated domain-containing protein / FHA domain-containing protein	C.G.	S.X.	Please select
0.02	4e-3	42	Contig12394_at	Contig12394	-	-	1e+1	At5g35110	unknown protein	C.G.	S.X.	Please select
0.02	1e-2	40	Contig6370_at	Contig6370	-	-	9e-9	At3g12390	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	C.G.	S.X.	Please select
0.02	1e-2	40	Contig9835_at	Contig9835	-	-	2e-3	At2g35360	ubiquitin family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	1e-7	57	Arabidopsis thaliana	At3g13200	820510	EMB2769 (EMBRYO DEFECTIVE 2769)	F:molecular_function unknown;P:nuclear mRNA splicing, via spliceosome;C:spliceosome;MOFPBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	2e-19	97	Glycine max	Gma.2337.2.S1_a_at	AW756331	-	-	1e-22	At3g13200	EMB2769 (EMBRYO DEFECTIVE 2769)	C.G.	S.X.	Please select
0.61	0	652	Oryza sativa	Os06g0106100	AK112060.1	-	Cwf15/Cwc15 cell cycle control protein familyprotein	6e-10	At3g13200	EMB2769 (EMBRYO DEFECTIVE 2769)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	2e-13	77	Populus trichocarpa	PtpAffx.20105.1.S1_at	CV267754	hypothetical protein	-	1e-30	At3g13200	EMB2769 (EMBRYO DEFECTIVE 2769)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.52	5e-118	424	Triticum aestivum	Ta.26370.1.A1_at	CD491128	-	-	3e-8	At3g13200	EMB2769 (EMBRYO DEFECTIVE 2769)	C.G.	S.X.	Please select
0.09	2e-13	75	Vitis vinifera	1616011_at	CB349137	hypothetical protein LOC100260003	-	9e-28	At3g13200	EMB2769 (EMBRYO DEFECTIVE 2769)	C.G.	S.X.	Please select
0.57	4e-175	613	Zea mays	Zm.2245.1.A1_at	CF625725	pre-mRNA-splicing factor cwc15	-	6e-7	At3g13200	EMB2769 (EMBRYO DEFECTIVE 2769)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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