Gene omics information

Query gene ID	Contig3877_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	78.7	Contig3877_s_at	Contig3877	-	-	1e-4	At3g46000	ADF2 (ACTIN DEPOLYMERIZING FACTOR 2)	S.X.	H.G.	Please select
0.67	84.7	Contig3876_at	Contig3876	-	-	7e-2	At4g21105	cytochrome-c oxidase/ electron carrier	S.X.	H.G.	Please select
0.61	78.7	rbaal38l09_s_at	rbaal38l09	-	-	1e+0	At5g50423	-	S.X.	H.G.	Please select
0.60	77.3	HV05A09u_s_at	HV05A09u	-	-	3e+0	At4g09250	-	S.X.	H.G.	Please select
0.40	53.1	Contig8625_at	Contig8625	-	-	2e-1	At3g04880	DRT102 (DNA-DAMAGE-REPAIR/TOLERATION 2)	S.X.	H.G.	Please select
0.33	42.6	Contig4208_at	Contig4208	-	-	6e-6	At2g36580	pyruvate kinase, putative	S.X.	H.G.	Please select
0.25	28.9	Contig5952_at	Contig5952	-	-	4e-1	At3g57040	ARR9 (RESPONSE REGULATOR 9)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.1	96.2	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.1	96.2	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.0	96.0	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.0	96.0	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.9	95.8	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.9	95.8	GSM398257	Martin_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6	95.3	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.5	95.1	GSM419972	Lemma_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.5	95.1	GSM440957	Control lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.5	95.1	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.60	0	1106	Contig3878_at	Contig3878	-	-	9e-6	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	C.G.	S.X.	Please select
0.01	8e-1	34	Contig7094_at	Contig7094	betaine aldehyde dehydrogenase	-	1e-6	At1g74920	ALDH10A8	C.G.	S.X.	Please select
0.01	3e+0	32	Contig2866_s_at	Contig2866	-	-	3e-40	At4g35830	aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig7975_at	Contig7975	-	-	1e-1	At4g35600	CONNEXIN 32	C.G.	S.X.	Please select
0.03	3e+0	32	Contig16957_at	Contig16957	-	-	5e+0	At3g06360	AGP27	C.G.	S.X.	Please select
0.01	3e+0	32	Contig5618_at	Contig5618	NADP-thioredoxin reductase C precursor	-	9e-32	At2g41680	NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C)	C.G.	S.X.	Please select
0.03	3e+0	32	HW06G10u_at	HW06G10u	-	-	3e+0	At3g27425	-	C.G.	S.X.	Please select
0.02	3e+0	32	HVSMEk0006O23r2_at	HVSMEk0006O23r2	-	-	1e+0	At5g13750	ZIFL1 (ZINC INDUCED FACILITATOR-like 1)	C.G.	S.X.	Please select
0.02	3e+0	32	HF11C23r_at	HF11C23r	-	-	1e+0	At1g64940	CYP89A6	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	1e-4	48	Arabidopsis thaliana	At3g46000	823743	ADF2 (ACTIN DEPOLYMERIZING FACTOR 2)	Encodes depolymerizing factor 2.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	6e-7	56	Glycine max	Gma.4270.1.S1_at	CF920385	-	-	2e-19	At3g46010	ADF1 (ACTIN DEPOLYMERIZING FACTOR 1)	C.G.	S.X.	Please select
0.44	7e-131	468	Oryza sativa	Os.2813.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	1e-11	71	Populus trichocarpa	PtpAffx.5187.1.A1_s_at	CV262014	actin depolymerizing factor 2	-	2e-16	At3g46010	ADF1 (ACTIN DEPOLYMERIZING FACTOR 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.73	0	1031	Triticum aestivum	Ta.1198.1.S1_at	BJ272933	-	-	1e-8	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	C.G.	S.X.	Please select
0.13	1e-4	46	Vitis vinifera	1607336_at	BQ800260	hypothetical protein LOC100242532	-	9e-15	At2g31200	ADF6 (ACTIN DEPOLYMERIZING FACTOR 6)	C.G.	S.X.	Please select
0.40	5e-116	416	Zea mays	Zm.7054.1.S1_at	BM331766	actin-depolymerizing factor 6	-	6e-4	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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