Gene omics information

Query gene ID Contig3871_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7388.7Contig3871_atContig3871--3e-41At5g20570RBX1 (RING-BOX 1)S.X.H.G.
0.9198.1Contig4560_x_atContig4560--2e-1At1g29000heavy-metal-associated domain-containing proteinS.X.H.G.
0.9198.1Contig4561_atContig4561--2e-69At5g58290RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)S.X.H.G.
0.7388.7HK05B20r_s_atHK05B20r--1e+0At1g27000bZIP family transcription factorS.X.H.G.
0.6077.3Contig15199_atContig15199--4e+0At2g40150-S.X.H.G.
0.5066.9Contig19727_atContig19727--1e+0At5g51790basix helix-loop-helix (bHLH) family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
9.098.9GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
8.798.9GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grains
7.198.4GSM238438Embryo 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grains
6.898.3GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
6.498.1GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
6.498.1GSM238437Embryo 48 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grains
6.198.0GSM238439Embryo 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grains
5.097.2GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
4.997.1GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
4.696.8GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.361e-100365Contig3870_atContig3870--4e-44At5g20570RBX1 (RING-BOX 1)C.G.S.X.
0.042e-342Contig11480_atContig11480--1e+0At1g76200unknown proteinC.G.S.X.
0.029e-340Contig8456_atContig8456--2e-4At1g36320unknown proteinC.G.S.X.
0.034e-238Contig17571_atContig17571--4e-1At4g22666-C.G.S.X.
0.021e-136Contig6979_atContig6979--2e-7At5g46860VAM3C.G.S.X.
0.031e-136Contig15377_atContig15377--6e-19At2g34140Dof-type zinc finger domain-containing proteinC.G.S.X.
0.021e-136Contig10477_atContig10477--7e-1At5g13020emsy N terminus domain-containing protein / ENT domain-containing proteinC.G.S.X.
0.026e-134Contig7490_atContig7490--2e-17At4g28480DNAJ heat shock family proteinC.G.S.X.
0.026e-134Contig7135_atContig7135--4e-31At2g41860CPK14C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.473e-41169Arabidopsis thalianaAt5g20570832179RBX1 (RING-BOX 1)Encodes a ring-box 1 like protein and component of the SCF ubiquitinization complex mediating auxin responses. Forms a E3 ubiquitin ligase complex with CUL3A and At1g21780.1 a BTB domain protein.---C.G.S.X.
0.414e-81301Glycine maxPsAffx.CL1363Contig1_atPsAffx.CL1363Contig1--2e-23At5g20570RBX1 (RING-BOX 1)C.G.S.X.
0.256e-109395Oryza sativaOs01g0106800AK099287.1-RING-box protein 1a (RBX1a-At) (At-Rbx1;1)(RBX1-2)3e-53At5g20570RBX1 (RING-BOX 1)C.G.S.X.
0.346e-34145Populus trichocarpaPtpAffx.77954.1.S1_atAY302066.1--1e-47At3g42830ring-box protein Roc1/Rbx1/Hrt1, putativeC.G.S.X.
0.663e-97355Triticum aestivumTaAffx.97723.1.A1_s_atCA722761--5e-15At5g20570RBX1 (RING-BOX 1)C.G.S.X.
0.301e-1995Vitis vinifera1615957_atBQ798110hypothetical protein LOC100246271-9e-39At5g20570RBX1 (RING-BOX 1)C.G.S.X.
0.453e-104377Zea maysZm.4011.1.S1_atAY112578.1--3e-54At5g20570RBX1 (RING-BOX 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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