Gene omics information

Query gene ID	Contig3870_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig3870_at	Contig3870	-	-	4e-44	At5g20570	RBX1 (RING-BOX 1)	S.X.	H.G.	Please select
0.83	94.0	Contig6585_at	Contig6585	-	-	1e-8	At5g58620	zinc finger (CCCH-type) family protein	S.X.	H.G.	Please select
0.67	84.7	Contig1516_s_at	Contig1516	-	-	3e-72	At5g62700	TUB3	S.X.	H.G.	Please select
0.67	84.7	Contig7389_at	Contig7389	-	-	1e-2	At3g26180	CYP71B20	S.X.	H.G.	Please select
0.55	72.0	Contig13485_s_at	Contig13485	-	-	4e+0	At5g35631	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig10884_at	Contig10884	-	-	3e-3	At5g17510	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.8	97.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.9	97.1	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.9	97.1	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.2	94.3	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.9	93.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
2.7	92.7	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.46	6e-137	486	HX03D08u_s_at	HX03D08u	-	-	6e-1	At1g04960	-	C.G.	S.X.	Please select
0.46	6e-137	486	HX03D08u_at	HX03D08u	-	-	6e-1	At1g04960	-	C.G.	S.X.	Please select
0.36	2e-100	365	Contig3871_at	Contig3871	-	-	3e-41	At5g20570	RBX1 (RING-BOX 1)	C.G.	S.X.	Please select
0.03	1e-2	40	Contig14509_at	Contig14509	-	-	6e-23	At4g13670	PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)	C.G.	S.X.	Please select
0.02	4e-2	38	Contig6202_at	Contig6202	-	-	2e-16	At2g14260	PIP	C.G.	S.X.	Please select
0.01	4e-2	38	Contig6435_at	Contig6435	-	-	4e-49	At4g37870	PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1)	C.G.	S.X.	Please select
0.02	4e-2	38	Contig4290_at	Contig4290	-	-	4e-15	At4g32390	phosphate translocator-related	C.G.	S.X.	Please select
0.02	2e-1	36	Contig16249_at	Contig16249	-	-	6e-4	At3g61320	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Contig6315_s_at	Contig6315	-	-	3e-9	At2g34770	FAH1 (FATTY ACID HYDROXYLASE 1)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	4e-44	178	Arabidopsis thaliana	At5g20570	832179	RBX1 (RING-BOX 1)	Encodes a ring-box 1 like protein and component of the SCF ubiquitinization complex mediating auxin responses. Forms a E3 ubiquitin ligase complex with CUL3A and At1g21780.1 a BTB domain protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.35	1e-78	293	Glycine max	PsAffx.CL1363Contig1_at	PsAffx.CL1363Contig1	-	-	2e-23	At5g20570	RBX1 (RING-BOX 1)	C.G.	S.X.	Please select
0.20	2e-53	210	Oryza sativa	Os02g0708300	AK066348.1	-	Conserved hypothetical protein	3e-13	At5g20570	RBX1 (RING-BOX 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.31	3e-39	163	Populus trichocarpa	PtpAffx.77954.1.S1_at	AY302066.1	-	-	1e-47	At3g42830	ring-box protein Roc1/Rbx1/Hrt1, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.63	0	827	Triticum aestivum	Ta.5537.1.S1_at	CD890152	-	-	2e-43	At5g20570	RBX1 (RING-BOX 1)	C.G.	S.X.	Please select
0.29	2e-58	224	Vitis vinifera	1621952_at	BQ797666	hypothetical protein LOC100259489	-	3e-54	At5g20570	RBX1 (RING-BOX 1)	C.G.	S.X.	Please select
0.37	5e-128	456	Zea mays	Zm.6061.1.S1_at	AY109202.1	hypothetical protein LOC100192928	-	2e-46	At5g20570	RBX1 (RING-BOX 1)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage