Gene omics information

Query gene ID	Contig3842_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	74.3	Contig3842_s_at	Contig3842	-	-	1e-3	At1g01470	LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)	S.X.	H.G.	Please select
0.29	35.5	Contig2282_at	Contig2282	-	-	3e+0	At1g24050	unknown protein	S.X.	H.G.	Please select
0.20	21.1	HT01D22w_at	HT01D22w	-	-	1e+0	At3g17500	F-box family protein	S.X.	H.G.	Please select
0.09	7.4	Contig4995_at	Contig4995	-	-	2e-1	At2g26290	ARSK1 (root-specific kinase 1)	S.X.	H.G.	Please select
0.09	7.4	Contig13832_at	Contig13832	-	-	8e+0	At5g40981	unknown protein	S.X.	H.G.	Please select
0.09	7.4	Contig7804_at	Contig7804	-	-	3e-25	At2g44900	armadillo/beta-catenin repeat family protein / F-box family protein	S.X.	H.G.	Please select
0.08	6.5	Contig16608_at	Contig16608	-	-	3e-1	At5g06960	OBF5 (OCS-ELEMENT BINDING FACTOR 5)	S.X.	H.G.	Please select
0.08	6.5	Contig3844_at	Contig3844	-	-	5e-47	At4g02080	ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.0	99.7	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
11.7	99.3	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
11.5	99.3	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
7.3	98.5	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
7.0	98.4	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds
6.8	98.3	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.9	97.9	GSM71140	OWB-D stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
5.8	97.8	GSM282024	Malting_day4_Merit_rep2	GSE11200	Expression data from malting barley seeds
5.7	97.7	GSM282020	Malting_day4_Legacy_rep 3	GSE11200	Expression data from malting barley seeds
5.7	97.7	GSM282022	Malting_day4_Merit_rep4	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	1314	Contig3842_at	Contig3842	-	-	1e-3	At1g01470	LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)	C.G.	S.X.	Please select
0.21	3e-12	71	Contig4760_s_at	Contig4760	-	-	1e+0	At4g38700	disease resistance-responsive family protein	C.G.	S.X.	Please select
0.03	1e-2	40	Contig18591_at	Contig18591	-	-	6e-1	At5g42090	-	C.G.	S.X.	Please select
0.02	4e-2	38	Contig7996_at	Contig7996	-	-	8e-10	At2g42750	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.03	2e-1	36	Contig11288_x_at	Contig11288	-	-	1e+0	At5g15960	KIN1	C.G.	S.X.	Please select
0.03	2e-1	36	Contig20495_at	Contig20495	-	-	3e-1	At5g15960	KIN1	C.G.	S.X.	Please select
0.03	2e-1	36	Contig11287_s_at	Contig11287	-	-	1e+0	At5g15960	KIN1	C.G.	S.X.	Please select
0.02	2e-1	36	Contig6718_s_at	Contig6718	-	-	1e-8	At5g40550	unknown protein	C.G.	S.X.	Please select
0.03	6e-1	34	HVSMEf0013J01r2_at	HVSMEf0013J01r2	-	-	2e-2	At2g39415	F-box family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-3	44	Arabidopsis thaliana	At1g01470	837071	LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)	Encodes late-embryogenesis abundant protein whose mRNA levels are induced in response to wounding and light stress. Might be involved in protection against dessication.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-1	38	Glycine max	PsAffx.CL577Contig1_at	PsAffx.CL577Contig1	-	-	2e-2	At5g15960	KIN1	C.G.	S.X.	Please select
0.37	4e-76	286	Oryza sativa	Os05g0584200	AK061818.1	-	Late embryogenesis abundant protein Lea14-A	4e-2	At1g01470	LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.218542.1.S1_at	pmrna34201	hypothetical protein	-	4e+1	At4g07940	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.65	0	852	Triticum aestivum	Ta.449.1.S1_at	CD908263	-	-	2e-3	At1g01470	LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1606659_s_at	CF210179	hypothetical protein LOC100244564	-	2e-19	At1g29280	WRKY65	C.G.	S.X.	Please select
0.46	3e-73	274	Zea mays	Zm.2020.1.A1_at	AY105938.1	hypothetical protein LOC100274480	-	1e-4	At1g01470	LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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