Gene omics information

Query gene ID	Contig3836_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	78.7	Contig3836_at	Contig3836	-	-	9e-3	At1g27540	F-box family protein	S.X.	H.G.	Please select
0.83	94.0	Contig16253_at	Contig16253	-	-	7e+0	At5g48515	-	S.X.	H.G.	Please select
0.61	78.7	Contig11287_s_at	Contig11287	-	-	1e+0	At5g15960	KIN1	S.X.	H.G.	Please select
0.59	75.8	Contig8340_at	Contig8340	-	-	8e-3	At2g41190	amino acid transporter family protein	S.X.	H.G.	Please select
0.55	72.0	Contig8790_at	Contig8790	-	-	8e-17	At5g02800	protein kinase family protein	S.X.	H.G.	Please select
0.53	69.7	Contig10972_at	Contig10972	-	-	1e-5	At1g32500	ATNAP6 (NON-INTRINSIC ABC PROTEIN 6)	S.X.	H.G.	Please select
0.53	69.7	Contig20219_at	Contig20219	-	-	1e-2	At3g24770	CLE41 (CLAVATA3/ESR-RELATED 41)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.3	98.8	GSM363465	5 mM B(OH)3 treatment (5B) - rep3	GSE14521	Late response to boron toxicity in barley leaves
7.4	98.5	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
6.8	98.3	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
6.6	98.2	GSM363467	10 mM B(OH)3 treatment (10B) - rep2	GSE14521	Late response to boron toxicity in barley leaves
6.3	98.1	GSM363464	5 mM B(OH)3 treatment (5B) - rep2	GSE14521	Late response to boron toxicity in barley leaves
5.9	97.9	GSM310867	lina_without_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.8	97.8	GSM310865	lina_without_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.8	97.8	GSM363463	5 mM B(OH)3 treatment (5B) - rep1	GSE14521	Late response to boron toxicity in barley leaves
5.8	97.8	GSM310455	lina_with_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.7	97.7	GSM363468	10 mM B(OH)3 treatment (10B) - rep3	GSE14521	Late response to boron toxicity in barley leaves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-3	44	Contig21411_at	Contig21411	-	-	2e-18	At4g38270	GAUT3 (Galacturonosyltransferase 3)	C.G.	S.X.	Please select
0.01	1e-3	44	Contig10470_at	Contig10470	-	-	4e-6	At1g70570	anthranilate phosphoribosyltransferase, putative	C.G.	S.X.	Please select
0.02	4e-3	42	Contig16322_at	Contig16322	-	-	5e+0	At5g57500	transferase, transferring glycosyl groups	C.G.	S.X.	Please select
0.03	4e-3	42	Contig8064_at	Contig8064	-	-	1e-1	At4g17670	senescence-associated protein-related	C.G.	S.X.	Please select
0.01	4e-3	42	Contig6282_at	Contig6282	-	-	2e-8	At2g36590	ProT3 (PROLINE TRANSPORTER 3)	C.G.	S.X.	Please select
0.02	4e-3	42	Contig11277_at	Contig11277	-	-	7e-7	At4g22850	-	C.G.	S.X.	Please select
0.01	4e-3	42	Contig10810_at	Contig10810	-	-	8e-1	At5g13290	CRN (CORYNE)	C.G.	S.X.	Please select
0.02	4e-3	42	Contig21558_at	Contig21558	-	-	5e-1	At5g56800	-	C.G.	S.X.	Please select
0.02	4e-3	42	Contig9143_at	Contig9143	-	-	2e+0	At2g26695	binding / zinc ion binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	9e-3	42	Arabidopsis thaliana	At1g27540	839645	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e-4	48	Glycine max	GmaAffx.44112.2.S1_at	AW734602	-	-	4e+0	At2g07640	D2,D4-dienoyl-CoA reductase-related	C.G.	S.X.	Please select
0.53	1e-92	341	Oryza sativa	Os01g0853000	AK099561.1	-	Conserved hypothetical protein	3e-2	At3g09050	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+0	34	Populus trichocarpa	PtpAffx.27835.1.S1_at	CV279344	hypothetical protein	-	3e-21	At3g09050	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.85	0	1493	Triticum aestivum	Ta.21286.1.S1_at	CA680116	-	-	2e+0	At3g28270	-	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1622136_at	CF205131.1	-	-	6e+0	At3g11405	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	Zea mays	Zm.9840.1.A1_at	CK826945	-	-	1e-1	At1g08500	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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