Gene omics information

Query gene ID Contig3831_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.4863.2Contig3831_atContig3831--3e-15At4g18960AG (AGAMOUS)S.X.H.G.
0.5066.9Contig15823_atContig15823--1e-1At1g52315unknown proteinS.X.H.G.
0.3037.0Contig8396_atContig8396--6e+0At3g20910NF-YA9 (NUCLEAR FACTOR Y, SUBUNIT A9)S.X.H.G.
0.2935.5Contig10035_atContig10035--5e+0Atmg00070-S.X.H.G.
0.097.4Contig1488_atContig1488--8e-1At5g39320UDP-glucose 6-dehydrogenase, putativeS.X.H.G.
0.064.8Contig10518_atContig10518--2e-5At1g16870mitochondrial 28S ribosomal protein S29-relatedS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
76.0100.0GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
69.2100.0GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
40.999.9GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
33.399.9GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
18.399.7GSM419981Seed_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spike
18.399.7GSM440975Control seed_Rep1GSE17669Gene expression in the barley spike during drought stress
18.199.7GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spike
18.199.7GSM440977Control seed_Rep3GSE17669Gene expression in the barley spike during drought stress
14.799.5GSM419982Seed_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spike
14.799.5GSM440976Control seed_Rep2GSE17669Gene expression in the barley spike during drought stress
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.281e-83309Contig11029_atContig11029--2e-10At2g42830SHP2 (SHATTERPROOF 2)C.G.S.X.
0.094e-31135Contig16350_atContig16350--9e-3At3g57390AGL18C.G.S.X.
0.114e-28125Contig2200_s_atContig2200--2e-3At2g45650AGL6 (AGAMOUS-LIKE 6)C.G.S.X.
0.099e-26117Contig2198_atContig2198--3e-6At1g24260SEP3 (SEPALLATA3)C.G.S.X.
0.089e-23107Contig7416_atContig7416--2e-4At5g60910AGL8 (agamous-like 8)C.G.S.X.
0.114e-22105Contig12483_atContig12483--2e-3At3g57390AGL18C.G.S.X.
0.061e-1893Contig11229_atContig11229--2e-4At5g60910AGL8 (agamous-like 8)C.G.S.X.
0.098e-1787Contig10383_atContig10383--6e-4At2g22540SVP (SHORT VEGETATIVE PHASE)C.G.S.X.
0.072e-1169Contig4516_atContig4516--5e-11At2g22540SVP (SHORT VEGETATIVE PHASE)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.183e-1583Arabidopsis thalianaAt4g18960827631AG (AGAMOUS)Floral homeotic gene encoding a MADS domain transcription factor. Specifies floral meristem and carpel and stamen identity. Binds CArG box sequences. It is the only C function gene. It interacts genetically with the other homeotic genes to specify the floral organs.---C.G.S.X.
0.129e-756Glycine maxGma.6760.1.S1_atBU544178--1e-42At4g09960STK (SEEDSTICK)C.G.S.X.
0.394e-130466Oryza sativaOs05g0203800AK111723.1-MADS box protein4e-20At3g58780SHP1 (SHATTERPROOF 1)C.G.S.X.
0.221e-552Populus trichocarpaPtpAffx.43839.1.S1_atDN501305hypothetical protein-3e-23At4g09960STK (SEEDSTICK)C.G.S.X.
0.8601342Triticum aestivumTa.12700.1.S1_atAB084577.1MADS box transcription factor-3e-6At2g42830SHP2 (SHATTERPROOF 2)C.G.S.X.
0.201e-1789Vitis vinifera1621836_atAF373604.1MADS-box protein 5-2e-9At4g09960STK (SEEDSTICK)C.G.S.X.
0.367e-88323Zea maysZm.133.1.S1_atL18924.1homologue of Arabidopsis gene AGAMOUS-5e-8At2g42830SHP2 (SHATTERPROOF 2)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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