Gene omics information

Query gene ID	Contig3816_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.42	55.2	Contig3816_s_at	Contig3816	-	-	3e-65	At1g09430	ACLA-3	S.X.	H.G.	Please select
0.63	80.3	Contig10523_at	Contig10523	-	-	2e-5	At5g01400	ESP4 (ENHANCED SILENCING PHENOTYPE 4)	S.X.	H.G.	Please select
0.53	69.7	Contig14721_at	Contig14721	-	-	5e+0	At4g15670	glutaredoxin family protein	S.X.	H.G.	Please select
0.47	62.2	rbaal31j11_s_at	rbaal31j11	-	-	1e+0	At4g20410	GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN)	S.X.	H.G.	Please select
0.44	58.9	Contig10808_at	Contig10808	-	-	6e+0	At5g18362	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig9101_s_at	Contig9101	-	-	7e+0	At5g23930	mitochondrial transcription termination factor-related / mTERF-related	S.X.	H.G.	Please select
0.38	49.5	rbaal41j07_at	rbaal41j07	-	-	4e+0	At3g27999	enzyme inhibitor/ pectinesterase	S.X.	H.G.	Please select
0.38	49.5	Contig17628_at	Contig17628	-	-	8e-1	At1g05960	binding	S.X.	H.G.	Please select
0.15	14.1	Contig5239_at	Contig5239	-	-	1e-9	At5g26120	ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.4	97.5	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
5.0	97.2	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.8	97.0	GSM146372	Golden Promise shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.7	96.9	GSM130806	JA and salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
4.7	96.9	GSM130800	control, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
4.6	96.8	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
4.5	96.7	GSM130804	JA, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
4.2	96.3	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.2	96.3	GSM68891	3 h control replicate 3	GSE3097	Barley1 salinity stress study
4.1	96.2	GSM130799	control, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.46	0	1128	Contig3815_at	Contig3815	-	-	9e-21	At1g09430	ACLA-3	C.G.	S.X.	Please select
0.65	0	858	Contig7708_at	Contig7708	-	-	2e-41	At1g09430	ACLA-3	C.G.	S.X.	Please select
0.01	4e-1	36	Contig8636_at	Contig8636	-	-	2e-3	At1g15710	prephenate dehydrogenase family protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig5358_at	Contig5358	-	-	5e-8	At5g48020	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig3654_s_at	Contig3654	-	-	2e-36	At3g20050	ATTCP-1	C.G.	S.X.	Please select
0.01	2e+0	34	Contig6441_s_at	Contig6441	-	-	9e-2	At5g25540	CID6 (CTC-Interacting Domain 6)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig12397_at	Contig12397	-	-	4e-2	At2g24590	splicing factor, putative	C.G.	S.X.	Please select
0.01	2e+0	34	Contig6442_at	Contig6442	-	-	2e-1	At2g38920	SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related	C.G.	S.X.	Please select
0.01	6e+0	32	Contig7322_at	Contig7322	-	-	2e-3	At3g27310	PUX1 (PLANT UBX DOMAIN-CONTAINING PROTEIN 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.68	3e-65	250	Arabidopsis thaliana	At1g09430	837466	ACLA-3	Encodes subunit A of the heteromeric enzyme ATP citrate lyase (ACL). In animals, ACL is encoded by a single gene; ACL in Arabidopsis is composed of two polypeptides, ACLA (encoded by 3 genes) and ACLB (encoded by 2 genes). The holoenzyme has an A(4)B(4)stoichiometry. Expression of both ACLA and ACLB but not of either of the subunits alone results in ACL activity.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.28	3e-10	67	Glycine max	GmaAffx.93551.1.S1_at	CF809276	-	-	2e-29	At1g09430	ACLA-3	C.G.	S.X.	Please select
0.66	0	1487	Oryza sativa	Os12g0566300	AK071114.1	-	ATP citrate lyase beta (Fragment)	2e-66	At1g09430	ACLA-3	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.38	7e-73	276	Populus trichocarpa	PtpAffx.138813.1.A1_s_at	CV254613	hypothetical protein	-	3e-104	At1g09430	ACLA-3	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.88	0	2583	Triticum aestivum	Ta.14073.1.S1_x_at	BJ228415	-	-	5e-36	At1g09430	ACLA-3	C.G.	S.X.	Please select
0.55	6e-85	313	Vitis vinifera	1622766_at	CF209938	hypothetical protein LOC100240939	-	3e-127	At1g09430	ACLA-3	C.G.	S.X.	Please select
0.67	0	1402	Zea mays	Zm.6713.1.A1_at	CK828034	ATP-citrate synthase	-	1e-36	At1g09430	ACLA-3	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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