Gene omics information

Query gene ID	Contig3811_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig3811_at	Contig3811	-	-	4e-24	At1g56600	AtGolS2 (Arabidopsis thaliana galactinol synthase 2)	S.X.	H.G.	Please select
0.83	94.0	Contig3815_at	Contig3815	-	-	9e-21	At1g09430	ACLA-3	S.X.	H.G.	Please select
0.67	84.7	Contig13032_at	Contig13032	-	-	5e-8	At3g61570	GDAP1 (GRIP-RELATED ARF-BINDING DOMAIN-CONTAINING ARABIDOPSIS PROTEIN 1)	S.X.	H.G.	Please select
0.55	72.0	Contig3812_at	Contig3812	-	-	2e-19	At1g09350	AtGolS3 (Arabidopsis thaliana galactinol synthase 3)	S.X.	H.G.	Please select
0.55	72.0	Contig13030_s_at	Contig13030	-	-	3e-8	At5g06530	ABC transporter family protein	S.X.	H.G.	Please select
0.44	58.9	Contig14269_at	Contig14269	-	-	1e-11	At2g21390	coatomer protein complex, subunit alpha, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
37.5	99.9	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
32.3	99.9	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
29.4	99.9	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
27.2	99.8	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
26.4	99.8	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
20.4	99.7	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
17.3	99.6	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
15.9	99.6	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
15.8	99.6	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
13.1	99.4	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.51	1e-173	609	Contig3812_at	Contig3812	-	-	2e-19	At1g09350	AtGolS3 (Arabidopsis thaliana galactinol synthase 3)	C.G.	S.X.	Please select
0.49	4e-127	454	Contig3810_s_at	Contig3810	-	-	3e-18	At1g09350	AtGolS3 (Arabidopsis thaliana galactinol synthase 3)	C.G.	S.X.	Please select
0.49	4e-127	454	Contig3810_at	Contig3810	-	-	3e-18	At1g09350	AtGolS3 (Arabidopsis thaliana galactinol synthase 3)	C.G.	S.X.	Please select
0.02	3e-1	36	Contig176_at	Contig176	-	-	1e-37	At1g09200	histone H3	C.G.	S.X.	Please select
0.01	3e-1	36	Contig4185_at	Contig4185	-	-	5e-2	At2g39050	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig11740_at	Contig11740	-	-	2e+0	At1g70949	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig971_at	Contig971	-	-	4e-47	At1g09200	histone H3	C.G.	S.X.	Please select
0.01	1e+0	34	Contig4395_at	Contig4395	-	-	3e-1	At3g20770	EIN3 (ETHYLENE-INSENSITIVE3)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig12495_at	Contig12495	-	-	4e-11	At4g31790	diphthine synthase, putative (DPH5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	4e-24	113	Arabidopsis thaliana	At1g56600	842114	AtGolS2 (Arabidopsis thaliana galactinol synthase 2)	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	2e-8	61	Glycine max	GmaAffx.84691.1.S1_at	AW306598	-	-	2e-32	At2g47180	AtGolS1 (Arabidopsis thaliana galactinol synthase 1)	C.G.	S.X.	Please select
0.65	0	1051	Oryza sativa	Os03g0316200	AK071812.1	-	WSI76 protein induced by water stress	2e-22	At1g56600	AtGolS2 (Arabidopsis thaliana galactinol synthase 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.28	3e-7	57	Populus trichocarpa	PtpAffx.209096.1.S1_at	pmrna17988	hypothetical protein	-	3e-27	At1g60470	AtGolS4 (Arabidopsis thaliana galactinol synthase 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.56	1e-162	573	Triticum aestivum	TaAffx.17365.1.S1_at	CK206695	-	-	1e-14	At1g56600	AtGolS2 (Arabidopsis thaliana galactinol synthase 2)	C.G.	S.X.	Please select
0.22	2e-23	109	Vitis vinifera	1608907_s_at	CA809004	hypothetical protein LOC100260266	-	1e-30	At1g60470	AtGolS4 (Arabidopsis thaliana galactinol synthase 4)	C.G.	S.X.	Please select
0.37	7e-107	387	Zea mays	Zm.12202.1.A1_at	BG549493	Galactinol synthase 1	-	3e-5	At1g09350	AtGolS3 (Arabidopsis thaliana galactinol synthase 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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