Gene omics information

Query gene ID	Contig3746_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.82	93.1	Contig3746_at	Contig3746	-	-	1e-1	At4g18335	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig11039_at	Contig11039	multiple inositol polyphosphate phosphatase PhyIIa2	-	4e-3	At1g09870	histidine acid phosphatase family protein	S.X.	H.G.	Please select
0.43	56.4	Contig6269_at	Contig6269	-	-	1e+1	At5g21170	5'-AMP-activated protein kinase beta-2 subunit, putative	S.X.	H.G.	Please select
0.40	53.1	Contig13085_at	Contig13085	-	-	8e-10	At1g73920	lipase family protein	S.X.	H.G.	Please select
0.39	50.5	rbags1k21_s_at	rbags1k21	-	-	1e+0	Atmg00940	-	S.X.	H.G.	Please select
0.37	47.9	Contig8159_at	Contig8159	-	-	4e-21	At1g08490	CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE)	S.X.	H.G.	Please select
0.36	47.1	EBma03_SQ003_L08_at	EBma03_SQ003_L08	-	-	4e-1	At3g57590	-	S.X.	H.G.	Please select
0.36	47.1	Contig6248_at	Contig6248	-	-	2e-67	At5g47010	LBA1 (LOW-LEVEL BETA-AMYLASE 1)	S.X.	H.G.	Please select
0.34	43.6	Contig8580_s_at	Contig8580	-	-	5e-2	At5g20670	unknown protein	S.X.	H.G.	Please select
0.34	43.6	HV12C23u_x_at	HV12C23u	-	-	5e+0	At5g35475	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.7	99.8	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
15.6	99.6	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
12.2	99.4	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.9	99.1	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
9.8	99.1	GSM372983	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.3	99.0	GSM372986	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.3	99.0	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
9.3	99.0	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
8.5	98.8	GSM372982	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.9	98.7	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.69	0	1390	Contig3744_s_at	Contig3744	-	-	6e-1	At1g78550	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select
0.05	2e-5	50	Contig11615_s_at	Contig11615	-	-	2e+0	At2g16700	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)	C.G.	S.X.	Please select
0.05	2e-5	50	Contig11615_at	Contig11615	-	-	2e+0	At2g16700	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)	C.G.	S.X.	Please select
0.04	7e-5	48	Contig6587_s_at	Contig6587	-	-	1e-4	At3g52470	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	C.G.	S.X.	Please select
0.04	7e-5	48	Contig6587_at	Contig6587	-	-	1e-4	At3g52470	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	C.G.	S.X.	Please select
0.01	3e-4	46	Contig6274_at	Contig6274	-	-	7e-14	At4g26270	PFK3 (PHOSPHOFRUCTOKINASE 3)	C.G.	S.X.	Please select
0.02	1e-3	44	Contig8685_at	Contig8685	-	-	9e-4	At2g26590	adhesion regulating molecule family	C.G.	S.X.	Please select
0.02	7e-2	38	Contig5704_at	Contig5704	-	-	2e-1	At1g49640	hydrolase	C.G.	S.X.	Please select
0.02	7e-2	38	Contig3965_at	Contig3965	-	-	3e-17	At1g27440	GUT2	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	38	Arabidopsis thaliana	At4g18335	827560	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	8e-7	56	Glycine max	Gma.11004.1.S1_at	AW102356	-	-	2e+0	At5g55856	-	C.G.	S.X.	Please select
0.39	3e-81	303	Oryza sativa	Os04g0685300	AF039532.1	-	Harpin-induced 1 domain containing protein	1e-1	At2g24440	selenium binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	8e-1	36	Populus trichocarpa	PtpAffx.219846.1.S1_at	pmrna35995	hypothetical protein	-	2e+1	At4g21970	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.66	0	789	Triticum aestivum	Ta.29367.1.S1_at	BJ224721	-	-	5e-1	At5g46780	VQ motif-containing protein	C.G.	S.X.	Please select
0.02	7e-1	34	Vitis vinifera	1607613_at	CF405728	hypothetical LOC100263530	-	2e-1	At3g10405	unknown protein	C.G.	S.X.	Please select
0.29	1e-37	157	Zea mays	Zm.1717.1.S1_at	CF635749	harpin inducing protein	-	2e+0	At3g07260	forkhead-associated domain-containing protein / FHA domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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