Gene omics information

Query gene ID	Contig3713_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig3713_s_at	Contig3713	-	-	3e-10	At4g33510	DHS2 (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase)	S.X.	H.G.	Please select
0.71	87.1	Contig1432_at	Contig1432	-	-	4e+0	At1g80340	GA3OX2 (GIBBERELLIN 3-OXIDASE 2)	S.X.	H.G.	Please select
0.55	72.0	HT03K14r_s_at	HT03K14r	-	-	2e-1	At5g02060	integral membrane protein, putative	S.X.	H.G.	Please select
0.50	66.9	Contig7509_at	Contig7509	-	-	1e-51	At1g11430	plastid developmental protein DAG, putative	S.X.	H.G.	Please select
0.38	49.5	Contig17632_at	Contig17632	-	-	2e+0	At4g11655	transmembrane protein, putative	S.X.	H.G.	Please select
0.36	47.1	Contig3235_at	Contig3235	-	-	9e-29	At2g44160	MTHFR2 (METHYLENETETRAHYDROFOLATE REDUCTASE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.9	98.3	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
6.8	98.3	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.4	98.1	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.4	98.1	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
5.4	97.5	GSM373002	genotype: 11542 - pathogen isolates: K1 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.7	96.9	GSM373003	genotype: 11542 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.6	96.8	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
4.6	96.8	GSM372964	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2	96.3	GSM372978	genotype: 11542 - pathogen isolates: 5874 - time: 8 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2	96.3	GSM372985	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	5e-4	46	Contig17924_at	Contig17924	-	-	2e+0	At5g55570	unknown protein	C.G.	S.X.	Please select
0.01	8e-3	42	Contig15964_at	Contig15964	-	-	1e-5	At4g33020	ZIP9	C.G.	S.X.	Please select
0.01	8e-3	42	Contig12289_at	Contig12289	-	-	4e-1	At1g63105	unknown protein	C.G.	S.X.	Please select
0.03	8e-3	42	Contig13932_at	Contig13932	-	-	3e-1	At3g29170	unknown protein	C.G.	S.X.	Please select
0.01	8e-3	42	Contig9787_at	Contig9787	-	-	4e+0	At2g27505	-	C.G.	S.X.	Please select
0.01	3e-2	40	Contig20981_at	Contig20981	-	-	1e+0	At5g04600	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.01	3e-2	40	HB08N07r_at	HB08N07r	-	-	2e-1	At3g04590	DNA-binding family protein	C.G.	S.X.	Please select
0.01	1e-1	38	Contig17249_at	Contig17249	-	-	3e-1	At2g05520	GRP-3 (GLYCINE-RICH PROTEIN 3)	C.G.	S.X.	Please select
0.02	1e-1	38	Contig3584_at	Contig3584	-	-	2e-3	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	3e-10	67	Arabidopsis thaliana	At4g33510	829489	DHS2 (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase)	Enzyme catalyzing the first committed step in aromatic amino acid biosynthesis	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	2e-21	105	Glycine max	Gma.2750.1.S1_at	AW349237	-	-	4e-74	At4g33510	DHS2 (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase)	C.G.	S.X.	Please select
0.60	0	1340	Oryza sativa	Os07g0622200	AK069968.1	-	Phospho-2-dehydro-3-deoxyheptonate aldolase 1,chloroplast precursor (EC 2.5.1.54)(Phospho-2-keto-3-deoxyheptonate aldolase 1) (DAHPsynthetase 1) (3-deoxy-D-arabino-heptulosonate7-phosphate synthase 1)	2e-8	At4g33510	DHS2 (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.25	6e-34	147	Populus trichocarpa	Ptp.657.1.S1_at	CK088107	2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase	-	2e-101	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.79	0	2454	Triticum aestivum	Ta.1906.1.S1_at	BJ285249	-	-	3e-10	At4g33510	DHS2 (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase)	C.G.	S.X.	Please select
0.15	2e-21	103	Vitis vinifera	1614440_at	BQ796922	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase	-	2e-53	At4g39980	DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1)	C.G.	S.X.	Please select
0.60	0	1324	Zea mays	Zm.4468.1.A1_at	AW288919	-	-	2e-17	At4g39980	DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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