CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig3707_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig3707_s_at Contig3707 - - 1e-23 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein S.X. H.G.
0.67 84.7 Contig2761_at Contig2761 - - 2e+0 At5g40550 unknown protein S.X. H.G.
0.61 78.7 Contig3527_at Contig3527 - - 4e-169 At5g19990 RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) S.X. H.G.
0.29 35.5 Contig4358_at Contig4358 - - 7e-5 At5g61500 ATG3 S.X. H.G.
0.23 26.1 Contig943_at Contig943 - - 1e-1 At1g68945 unknown protein S.X. H.G.
0.19 19.6 Contig7551_at Contig7551 - - 2e-25 At3g10640 VPS60.1 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.6 95.3 GSM440966 Stressed palea_Rep1 GSE17669 Gene expression in the barley spike during drought stress
3.5 95.1 GSM419972 Lemma_Rep1 GSE16754 Comparative transcriptional profiling of organs of the barley spike
3.5 95.1 GSM440957 Control lemma_Rep1 GSE17669 Gene expression in the barley spike during drought stress
3.2 94.3 GSM419977 Palea_Rep3 GSE16754 Comparative transcriptional profiling of organs of the barley spike
3.2 94.3 GSM440965 Control palea_Rep3 GSE17669 Gene expression in the barley spike during drought stress
3.2 94.3 GSM440960 Stressed lemma_Rep1 GSE17669 Gene expression in the barley spike during drought stress
3.2 94.3 GSM440967 Stressed palea_Rep2 GSE17669 Gene expression in the barley spike during drought stress
3.1 94.1 GSM419976 Palea_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
3.1 94.1 GSM440964 Control palea_Rep2 GSE17669 Gene expression in the barley spike during drought stress
3.0 93.8 GSM146362 Golden Promise Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.99 0 2591 Contig3707_at Contig3707 - - 1e-23 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein C.G. S.X.
0.08 1e-9 63 Contig6815_at Contig6815 - - 6e-11 At3g06170 TMS membrane family protein / tumour differentially expressed (TDE) family protein C.G. S.X.
0.02 8e-2 38 Contig26206_at Contig26206 - - 7e-2 At4g21620 glycine-rich protein C.G. S.X.
0.01 8e-2 38 Contig12291_at Contig12291 - - 5e-2 At1g18860 WRKY61 C.G. S.X.
0.01 3e-1 36 Contig9812_at Contig9812 - - 5e-11 At2g25530 AFG1-like ATPase family protein C.G. S.X.
0.01 3e-1 36 Contig5599_at Contig5599 - - 6e-1 At1g16640 transcriptional factor B3 family protein C.G. S.X.
0.02 3e-1 36 Contig5597_s_at Contig5597 - - 4e+0 At5g54095 unknown protein C.G. S.X.
0.02 3e-1 36 Contig2470_s_at Contig2470 - - 1e-1 At4g16380 metal ion binding C.G. S.X.
0.02 1e+0 34 Contig18534_at Contig18534 - - 8e-1 At2g33775 RALFL19 (ralf-like 19) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 1e-23 111 Arabidopsis thaliana At1g16180 838187 TMS membrane family protein / tumour differentially expressed (TDE) family protein F:molecular_function unknown;P:unknown;C:endomembrane system, membrane;MFPO - - - C.G. S.X.
0.08 7e-14 79 Glycine max GmaAffx.66328.1.S1_at AW277770 - - 3e-13 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein C.G. S.X.
0.58 0 1011 Oryza sativa Os02g0792900 AK068367.1 - TMS membrane protein/tumour differentiallyexpressed protein family protein 1e-15 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein C.G. S.X.
0.29 5e-24 113 Populus trichocarpa PtpAffx.1257.1.S1_a_at CF228330 hypothetical protein - 3e-65 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein C.G. S.X.
0.71 0 1528 Triticum aestivum Ta.906.1.S1_at CK195658 - - 3e-22 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein C.G. S.X.
0.21 2e-32 139 Vitis vinifera 1611216_at CB912018 hypothetical protein LOC100262087 - 4e-126 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein C.G. S.X.
0.56 0 1007 Zea mays Zm.747.1.A1_at CF627612 hypothetical protein LOC100191588 - 3e-22 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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