CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig3685_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.40 53.1 Contig3685_at Contig3685 - - 8e+0 At5g18970 AWPM-19-like membrane family protein S.X. H.G.
0.67 84.7 Contig9729_at Contig9729 - - 3e+0 At3g56580 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.32 40.3 Contig14020_at Contig14020 - - 4e-7 At3g18170 transferase, transferring glycosyl groups S.X. H.G.
0.26 30.4 Contig4110_s_at Contig4110 - - 5e-2 At5g41400 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.21 22.6 Contig15918_at Contig15918 - - 2e+0 At5g43285 - S.X. H.G.
0.14 12.9 Contig690_s_at Contig690 - - 4e-1 At1g06540 unknown protein S.X. H.G.
0.06 4.8 Contig13493_at Contig13493 - - 2e-7 At5g64220 calmodulin-binding protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
78.0 100.0 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
76.6 100.0 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
68.7 100.0 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
44.1 99.9 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
30.2 99.9 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
15.0 99.5 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
10.9 99.2 GSM71140 OWB-D stress replicate 2 GSE3170 Barley single feature polymorphisms and drought stress gene expression
9.3 99.0 GSM238418 Endosperm 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.2 98.5 GSM282025 Control_dryseed_Morex_rep1 GSE11200 Expression data from malting barley seeds
7.1 98.4 GSM238419 Endosperm 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.49 0 890 Contig3684_at Contig3684 - - 2e+0 At4g24370 unknown protein C.G. S.X.
0.51 0 882 Contig3686_at Contig3686 - - 5e-1 At4g05490 F-box family protein (FBL22) C.G. S.X.
0.38 1e-55 216 Contig3690_s_at Contig3690 plasma membrane associated protein - 4e+0 At2g30000 - C.G. S.X.
0.05 2e-11 69 HV_CEa0008C11r2_at HV_CEa0008C11r2 - - 8e-1 At1g56580 unknown protein C.G. S.X.
0.05 7e-11 67 HU11J14u_at HU11J14u - - 4e+0 At5g19900 PRLI-interacting factor, putative C.G. S.X.
0.03 3e-10 65 Contig8323_at Contig8323 - - 3e+0 Atmg00890 - C.G. S.X.
0.05 3e-10 65 Contig4210_at Contig4210 - - 1e+0 At1g14160 integral membrane family protein C.G. S.X.
0.04 3e-10 65 Contig1491_at Contig1491 - - 7e+0 At4g20325 unknown protein C.G. S.X.
0.03 1e-9 63 Contig7292_s_at Contig7292 - - 3e+0 At4g37980 ELI3-1 (ELICITOR-ACTIVATED GENE 3-1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e+0 32 Arabidopsis thaliana At5g18970 832015 AWPM-19-like membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;P - - - C.G. S.X.
0.03 7e-1 36 Glycine max PsAffx.psMA012xH09f_at PsAffx.psMA012xH09f - - 1e+1 At5g02580 unknown protein C.G. S.X.
0.34 1e-104 381 Oryza sativa Os05g0381400 AK102039.1 - ABA induced plasma membrane protein PM 19 2e+0 At2g01755 unknown protein C.G. S.X.
0.03 7e-1 36 Populus trichocarpa PtpAffx.81472.1.S1_at BU882881 hypothetical protein - 4e-26 At3g11490 rac GTPase activating protein, putative C.G. S.X.
0.53 0 716 Triticum aestivum Ta.14259.1.S1_at BJ300061 - - 2e+0 At5g45940 atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11) C.G. S.X.
0.02 6e-1 34 Vitis vinifera 1618257_at CF568878 - - 2e-1 At1g80730 ZFP1 (ZINC-FINGER PROTEIN 1) C.G. S.X.
0.27 2e-88 325 Zea mays Zm.2959.1.S1_at CA403221 hypothetical protein LOC100279493 - 7e-1 At5g18970 AWPM-19-like membrane family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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